5IBN - JenaLib

Title :   ULTRA HIGH RESOLUTION CRYSTAL STRUCTURE OF THE APO- FORM OF SECOND BROMODOMAIN OF BRD2.

Authors :   S. K. Tripathi, B. Padmanabhan

Date :   22 Feb 16 (Deposition) - 22 Jun 16 (Release) - 22 Jun 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   0.94

Chains :   Asym./Biol. Unit : A

Keywords :   Bet-Family, Acetyl-Lysine Binding, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Tripathi, S. Mathur, P. Deshmukh, R. Manjula, B. Padmanabhan
A Novel Phenanthridionone Based Scaffold As A Potential Inhibitor Of The Brd2 Bromodomain: Crystal Structure Of The Complex
Plos One V. 11 56344 2016
PubMed-ID: 27243809 | Reference-DOI: 10.1371/JOURNAL.PONE.0156344

Compounds

Molecule 1 - BROMODOMAIN-CONTAINING PROTEIN 2
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Taxid	:	511693
	Fragment	:	UNP RESIDUES 348-455
	Gene	:	BRD2, KIAA9001, RING3
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	O27.1.1,REALLY INTERESTING NEW GENE 3 PROTEIN

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 8)

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLN A:412 , ARG A:419	binding site for residue CL A 501
2	AC2	SOFTWARE	TRP A:370 , PRO A:371 , MET A:438	binding site for residue GOL A 502
3	AC3	SOFTWARE	SER A:397 , THR A:398 , ARG A:401 , HOH A:712	binding site for residue GOL A 503
4	AC4	SOFTWARE	LEU A:383 , ASN A:429 , HOH A:604 , HOH A:614 , HOH A:617	binding site for residue GOL A 504
5	AC5	SOFTWARE	TYR A:368 , LYS A:402 , ASP A:407 , MET A:438 , LYS A:441 , HOH A:609 , HOH A:627 , HOH A:681 , HOH A:715	binding site for residue GOL A 505
6	AC6	SOFTWARE	HIS A:387 , ILE A:390 , LYS A:391 , PRO A:393 , HOH A:621 , HOH A:673	binding site for residue GOL A 506
7	AC7	SOFTWARE	ARG A:409 , ASP A:410 , PRO A:431 , ARG A:440 , ASP A:444 , VAL A:445 , PHE A:448 , HOH A:619 , HOH A:652 , HOH A:665 , HOH A:708 , HOH A:735	binding site for residue PGE A 507
8	AC8	SOFTWARE	PRO A:347 , LEU A:350 , LYS A:351 , ASN A:354 , HOH A:683	binding site for residue PGE A 508

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:111
                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 5ibn A 345 ANPEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD 455
                                   354       364       374       384       394       404       414       424       434       444       454

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

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