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(-) Description

Title :  CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS PRE-INSERTION SUBSTRATE COMPLEX FOR DE NOVO TRANSCRIPTION INITIATION
 
Authors :  Y. Zhang, R. H. Ebright, E. Arnold
Date :  20 Jan 14  (Deposition) - 07 May 14  (Release) - 07 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  De Novo Transcription Initiation, Substrate Complex, Transcription Initiation, I Site, I+1 Site, Rna Polymerase, Dna/Rna/Ntp Binding, Polymerization Of Ribonucleotides, Nucleoid, Transcription, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Zhang, D. Degen, M. X. Ho, E. Sineva, K. Y. Ebright, Y. W. Ebright, V. Mekler, H. Vahedian-Movahed, Y. Feng, R. Yin, S. Tuske, H. Irschik, R. Jansen, S. Maffioli, S. Donadio, E. Arnold, R. H. Ebright
Ge23077 Binds To The Rna Polymerase 'I' And 'I+1' Sites And Prevents The Binding Of Initiating Nucleotides.
Elife V. 3 02450 2014
PubMed-ID: 24755292

(-) Compounds

Molecule 1 - DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA
    Chains: A, B
    EC Number: 2.7.7.6
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8 / ATCC 27634 / DSM 579
    Synonym: RNAP SUBUNIT ALPHA, RNA POLYMERASE SUBUNIT ALPHA, TRANSCRIPTASE SUBUNIT ALPHA
 
Molecule 2 - DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA
    Chains: C
    EC Number: 2.7.7.6
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8 / ATCC 27634 / DSM 579
    Synonym: RNAP SUBUNIT BETA, RNA POLYMERASE SUBUNIT BETA, TRANSCRIPTASE SUBUNIT BETA
 
Molecule 3 - DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'
    Chains: D
    EC Number: 2.7.7.6
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8 / ATCC 27634 / DSM 579
    Synonym: RNAP SUBUNIT BETA', RNA POLYMERASE SUBUNIT BETA', TRANSCRIPTASE SUBUNIT BETA'
 
Molecule 4 - DNA-DIRECTED RNA POLYMERASE SUBUNIT OMEGA
    Chains: E
    EC Number: 2.7.7.6
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8 / ATCC 27634 / DSM 579
    Synonym: RNAP OMEGA SUBUNIT, RNA POLYMERASE OMEGA SUBUNIT, TRANSCRIPTASE SUBUNIT OMEGA
 
Molecule 5 - DNA DIRECTED RNA POLYMERASE SIGMA FACTOR A
    Chains: F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RPOD, TTHA0532
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8 / ATCC 27634 / DSM 579
    Synonym: RNA POLYMERASE SIGMA FACTOR
 
Molecule 6 - 5'-D(*CP*CP*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP *GP*GP*G)-3'
    Chains: G
    Engineered: YES
    Other Details: PROMOTER DNA TEMPLATE STRAND
    Synthetic: YES
 
Molecule 7 - 5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP *GP*GP*AP*TP*GP*CP*AP*GP*G)-3'
    Chains: H
    Engineered: YES
    Other Details: PROMOTER DNA NONTEMPLATE STRAND
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
12TM1Ligand/Ion5'-O-[(S)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]METHYL}PHOSPHORYL]CYTIDINE
2ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
3MG2Ligand/IonMAGNESIUM ION
4ZN2Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS D:1112 , CYS D:1194 , CYS D:1201 , CYS D:1204BINDING SITE FOR RESIDUE ZN D 2001
2AC2SOFTWARECYS D:58 , CYS D:60 , CYS D:73 , CYS D:76BINDING SITE FOR RESIDUE ZN D 2002
3AC3SOFTWAREASP D:739 , ASP D:741 , ASP D:743 , ATP D:2005BINDING SITE FOR RESIDUE MG D 2003
4AC4SOFTWAREGLU C:685 , ASP D:739 , 2TM D:2006BINDING SITE FOR RESIDUE MG D 2004
5AC5SOFTWAREGLN C:567 , LYS C:838 , LYS C:846 , TYR C:998 , HIS C:999 , ARG D:704 , ASP D:741 , ASP D:743 , MG D:2003 , 2TM D:2006 , HOH D:2105 , HOH D:2120 , HOH D:2132 , HOH D:2168 , DT G:15 , DC G:16BINDING SITE FOR RESIDUE ATP D 2005
6AC6SOFTWAREARG C:879 , ARG D:704 , PRO D:706 , ASN D:737 , ASP D:739 , ARG D:1029 , MG D:2004 , ATP D:2005 , HOH D:2167 , DG G:14BINDING SITE FOR RESIDUE 2TM D 2006

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OIO)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Glu A:26 -Pro A:27
2Glu B:26 -Pro B:27
3Phe C:52 -Pro C:53
4Asp C:295 -Gly C:296
5Ala D:705 -Pro D:706
6Ala D:802 -Gly D:803

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OIO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OIO)

(-) Exons   (0, 0)

(no "Exon" information available for 4OIO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:226
                                                                                                                                                                                                                                                                   
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee...eeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeee...............hhhhhhhhhh...eee......eeeeeeeee...eee.hhh.....eee.....eeee.....eeeeeeeeeee..eehhhhhh.......ee..ee...eeeeeeeeeee.......eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4oio A    4 SKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ  229
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223      


Chain B from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee...eeeeeeeee..hhhhhhhhhhhhhhhhh.eeeeeeeeee...............hhhhhhhhhhh..eee......eeeeeeeee..eeee.hhh.....eee.....eeeee....eeeeeeeeeeee.eehhhhhh.......ee..ee...eeeeeeeeeeeee..eeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4oio B    7 KAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNP  228
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226  


Chain C from PDB  Type:PROTEIN  Length:1111
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.............hhhhhhhhhhhhh...hhhhh...hhhhhhhhhh.....eeeeeeeee.....hhhhhhhhh...eeeeeeeeeee......eeeeeeeeeeee.......eee..eeeee.eeeee..eeeeee.......eeeeee........eeeee.....eeeee...eeehhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh........hhhhhhhhhhhhh........ee......ee.hhhhhhhhhhhhhhh..............eeeehhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh.hhhhhhhhhhhhhh...eee....hhhhhhhhhheee............hhhhhh.hhhhh................eee.....ee.....eeeeeeeee..eeeeeeeeehhhhhh..eee.....ee..ee....eeeee..eeeeehhhhh.eee.hhhhhh..hhhhh.hhhhhhhhhhhhhhhhhh............ee..hhhhhhhhh...ee....eeeeee...eeeeee....eeeee....ee.....ee..ee......ee....eeee...ee..ee...eeeeeee......hhhh.eeeehhhhhh....eeeeeeeeeeee................hhhhhh............ee....eee..eee......hhhhhhhhhhhh.....eee..ee......eeeeeeeeee...........eeeeeeeeeeeee......eeee....eeeeeeeehhhhh..........eee...hhhhhh.hhhhhhhhhhhhhhhhh.eee.......hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.......hhhhhhhhhhhh.ee..............eeeeeeeeee...hhhhhh........................eeehhhhhhhhhhh.hhhhhhhhhh....hhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.eeeeee................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4oio C    1 MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEELVLDFLEYRLGEPPFPQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVLGYDQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMGSEDSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGGVVTDEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSPEEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPSVPESFRVLVKELQALALDVQTLDEKDNPVDIFEGLASK 1118
                                    10        20        30        40        50     || 67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117 
                                                                                  56|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
                                                                                   64                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              


Chain D from PDB  Type:PROTEIN  Length:1479
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.hhhhhhhhh.............................................................hhhhhh.eeeeeeeeee.hhhh....hhhhhhh..hhhhhhhhhh...eeee................eehhhhhhhhhh..eeeee.............ee...............eeeeeeeeeeeeeeeeeeeeeeeeee..............eeeeeeeeeeee....eeeeeee....eeeeeee..eeeeeeee.eeeee......ee....eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeeeeeeeee.....ee.....eee...eeeee.......eee...eeeeeeeeeeeeee.eeeee...........ee.................eeeeee....eeeeee....eee.hhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhh.eeeeeee.hhhhh.eee.....eee.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..................hhhhhhh...hhhhhhh..eee..eeeeeeee.......eeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee.....hhh.eeeeeeeee....eeehhhhhhhhh......eeeee...hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhh.............hhhhhhhhhhhh...............hhhhhhhee.hhhhhhhhhhh........eeeee..eeeeehhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh...hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhhhh.........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee..........eeee.ee.....ee.hhhhhhhhhh.......eee..eee......hhhhhhhhhhhhhh....eeee..........eehhhhhh.............hhhhhhhhhhhhhhhh.....hhhhhhhhhh..............eeeeeee....eeeeee....eeeeee............ee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.eeeeee..........eeehhhhhhhhhhhh.......eeeee..hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee...hhhhhhhh.....hhhhhhhhhh.eeeehhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4oio D    3 KEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPTRSLRLRKRADIEAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKEARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEA 1498
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992      1002      1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122  ||  1135      1145      1155      1165      1175      1185      1195      1205      1215      1225      1235   || 1259      1269      1279      1289      1299      1309      1319      1329      1339      1349      1359      1369      1379      1389      1399      1409      1419      1429      1439      1449      1459      1469      1479      1489         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           1125|                                                                                                          1239|                                                                                                                                                                                                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            1129                                                                                                           1254                                                                                                                                                                                                                                                    


Chain E from PDB  Type:PROTEIN  Length:94
                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.hhhhhhhhhhhhhhhhhhh.............ee......ee..hhhhhhhhhhhh..eeee....hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                4oio E    2 AEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAVTWAMKELLTGRLVFGENLVPEDRLQKEMERLYPV   95
                                    11        21        31        41        51        61        71        81        91    


Chain F from PDB  Type:PROTEIN  Length:344
                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..............hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhh...ee...........hhhhhh......hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh........hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4oio F   78 SDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRDF  421
                                    87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417    


Chain G from PDB  Type:DNA  Length:16
                                                 
                4oio G    4 GCATCCGTGAGTCGAG   19
                                    13      


Chain H from PDB  Type:DNA  Length:24
                                                         
                4oio H    1 TATAATGGGAGCTGTCACGGATGC   24
                                    10        20
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OIO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OIO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OIO)

(-) Gene Ontology  (15, 32)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q5SKW1_THET8 | Q5SKW1: 5vo8 5voi
        RPOA_THET8 | Q5SHR6: 1zyr 2a68 2a69 2a6e 2a6h 2be5 2cw0 2o5i 2o5j 3aoh 3aoi 3dxj 3wod 4g7h 4g7o 4g7z 4gzy 4gzz 4mq9 4oin 4oip 4oiq 4oir 4wqs 4wqt 5d4c 5d4d 5d4e 5e17 5e18 5i2d 5tmc 5tmf 5vo8
        RPOB_THET8 | Q8RQE9: 1iw7 1smy 1zyr 2a68 2a69 2a6e 2a6h 2be5 2cw0 2o5i 2o5j 2ppb 3aoh 3aoi 3dxj 3eql 3wod 3woe 3wof 4g7h 4g7o 4g7z 4gzy 4gzz 4mq9 4oin 4oip 4oiq 4oir 4q4z 4q5s 4wqs 4wqt 5d4c 5d4d 5d4e 5e17 5e18 5i2d 5tmc 5tmf 5vo8 5voi 5x21 5x22
        RPOC_THET8 | Q8RQE8: 1iw7 1smy 1zyr 2a68 2a69 2a6e 2a6h 2be5 2cw0 2o5i 2o5j 2ppb 3aoh 3aoi 3dxj 3eql 3wod 4g7h 4g7o 4g7z 4gzy 4gzz 4mq9 4oin 4oip 4oiq 4oir 4q4z 4q5s 4wqs 4wqt 5d4c 5d4d 5d4e 5e17 5e18 5i2d 5tmc 5tmf 5vo8 5voi 5x21 5x22
        RPOZ_THET8 | Q8RQE7: 1iw7 1smy 1zyr 2a68 2a69 2a6e 2a6h 2be5 2cw0 2o5i 2o5j 2ppb 3aoh 3aoi 3dxj 3eql 3wod 4g7h 4g7o 4g7z 4gzy 4gzz 4mq9 4oin 4oip 4oiq 4oir 4q4z 4q5s 4wqs 4wqt 5d4c 5d4d 5d4e 5e17 5e18 5i2d 5tmc 5tmf 5vo8 5voi
UniProtKB/TrEMBL
        Q5SKW1_THET8 | Q5SKW1: 1iw7 1smy 1zyr 2a68 2a69 2a6e 2a6h 2be5 2cw0 3dxj 3eql 3wod 4g7h 4g7o 4g7z 4mq9 4oin 4oip 4oiq 4oir 4q4z 4q5s 5d4c 5d4d 5d4e 5e17 5e18 5i2d 5tmc 5tmf

(-) Related Entries Specified in the PDB File

4oin 4oip 4oiq 4oir