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(-) Description

Title :  HUMAN MENIN WITH BOUND INHIBITOR MIV-6R
 
Authors :  S. He, T. J. Senter, J. W. Pollock, C. Han, S. K. Upadhyay, T. Purohit, R. D. Gogliotti, C. W. Lindsley, T. Cierpicki, S. R. Stauffer, J. Gremb
Date :  15 Jan 14  (Deposition) - 05 Mar 14  (Release) - 19 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.53
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Binding-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. He, T. J. Senter, J. Pollock, C. Han, S. K. Upadhyay, T. Purohit, R. D. Gogliotti, C. W. Lindsley, T. Cierpicki, S. R. Stauffer, J. Grembecka
High-Affinity Small-Molecule Inhibitors Of The Menin-Mixed Lineage Leukemia (Mll) Interaction Closely Mimic A Natural Protein-Protein Interaction.
J. Med. Chem. V. 57 1543 2014
PubMed-ID: 24472025  |  Reference-DOI: 10.1021/JM401868D

(-) Compounds

Molecule 1 - MENIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MEN1, SCG2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 11)

Asymmetric/Biological Unit (6, 11)
No.NameCountTypeFull Name
12SF1Ligand/Ion4-(3-{4-[(R)-AMINO(CYCLOPENTYL)PHENYLMETHYL]PIPERIDIN-1-YL}PROPOXY)BENZONITRILE
2DMS3Ligand/IonDIMETHYL SULFOXIDE
3PG41Ligand/IonTETRAETHYLENE GLYCOL
4PGA1Ligand/Ion2-PHOSPHOGLYCOLIC ACID
5SO43Ligand/IonSULFATE ION
6TBF2Ligand/IonTERT-BUTYL FORMATE

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:154 , SER A:155 , 2SF A:602 , HOH A:1045BINDING SITE FOR RESIDUE TBF A 601
02AC2SOFTWARESER A:155 , SER A:178 , HIS A:181 , ALA A:242 , MET A:278 , TYR A:319 , MET A:322 , TYR A:323 , TRP A:341 , GLU A:363 , TBF A:601 , TBF A:611 , HOH A:747 , HOH A:1070BINDING SITE FOR RESIDUE 2SF A 602
03AC3SOFTWARELEU A:75 , THR A:76 , TYR A:361 , PHE A:365 , HIS A:433 , HOH A:735 , HOH A:795 , HOH A:1024BINDING SITE FOR RESIDUE PG4 A 603
04AC4SOFTWARETYR A:133 , PHE A:134 , ARG A:137 , ARG A:332 , HOH A:1022BINDING SITE FOR RESIDUE SO4 A 604
05AC5SOFTWAREPRO A:12 , ARG A:14 , HOH A:1031BINDING SITE FOR RESIDUE SO4 A 605
06AC6SOFTWARELYS A:377 , ARG A:446BINDING SITE FOR RESIDUE SO4 A 606
07AC7SOFTWAREPHE A:43 , PHE A:47 , PRO A:79 , GLY A:386 , GLN A:400 , HOH A:845 , HOH A:895BINDING SITE FOR RESIDUE DMS A 607
08AC8SOFTWARETRP A:126 , LYS A:135BINDING SITE FOR RESIDUE PGA A 608
09AC9SOFTWAREVAL A:185 , GLY A:190 , GLU A:191 , TYR A:227 , ARG A:229 , SER A:583BINDING SITE FOR RESIDUE DMS A 609
10BC1SOFTWAREVAL A:334 , ARG A:335 , ALA A:403 , HOH A:803 , HOH A:1104 , HOH A:1129BINDING SITE FOR RESIDUE DMS A 610
11BC2SOFTWARE2SF A:602BINDING SITE FOR RESIDUE TBF A 611

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OG8)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gly A:2 -Leu A:3
2Phe A:11 -Pro A:12
3Val A:460 -Pro A:461

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OG8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OG8)

(-) Exons   (0, 0)

(no "Exon" information available for 4OG8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:469
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhh............hhhhhhhhh..hhhhhhhhhhhhhhhh.....eeee....eeeeehhhhheee................hhhhhhh.hhhhhhhh.ee.hhhhhhhhhhhh...eee..eehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh.hhhhhh..eee.....eee..hhhhhhhhhhh.....hhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4og8 A   2 GLKAAQKTLFPLRSIDDVVRLFAAELGREEPDLVLLSLVLGFVEHFLAVNRVGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELVKKVSDVIWNSLSRSYFKDRAHIQSLFSFITGTKLDSSGVAFAVVGACQALGLRDVHLALSEDHAWVVFGPNGEQTAEVTWHGKGNEDRRGQTVNAGVAERSWLYLKGSYMRCDRKMEVAFMVCAINPSIDLHTDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVIPNLLKEAASLLEAGSQGSALQDPECFAHLLRFYDGICKWEEGSPTPVLHVGWATFLVQSLGRFEGQVRQKVRIVSVPGPVLTFQSEKMKGMKELLVATKINSSAIKLQLTAQSQVQMK 588
                                    11        21        31        41        51 ||     81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381    || 403       413       423       433       443       453       549       559       569       579         
                                                                              53|                                                                                                                                                                                                                                                                                                                     386|                                                           461|                                        
                                                                               74                                                                                                                                                                                                                                                                                                                      399                                                            548
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OG8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OG8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OG8)

(-) Gene Ontology  (57, 57)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  4og8
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  MEN1_HUMAN | O00255
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MEN1_HUMAN | O00255: 3u84 3u85 3u86 3u88 4gpq 4gq3 4gq4 4gq6 4i80 4og3 4og4 4og5 4og6 4og7 4x5y 4x5z 5db0 5db1 5db2 5db3 5dd9 5dda 5ddb 5ddc 5ddd 5dde 5ddf

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4OG8)