Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  AN INTERNAL LIGAND-BOUND, METASTABLE STATE OF A LEUKOCYTE INTEGRIN, AXB2
 
Authors :  M. Sen, K. Yuki, T. A. Springer
Date :  29 Oct 13  (Deposition) - 15 Jan 14  (Release) - 15 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rossmann Fold, , Complement Receptor, Ic3B, Icam-1, Fibrinogen, Denaturated Proteins, Heparin, N-Linked Glycosylation, Membrane, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Sen, K. Yuki, T. A. Springer
An Internal Ligand-Bound, Metastable State Of A Leukocyte Integrin, Alpha X Beta 2.
J. Cell Biol. V. 203 629 2013
PubMed-ID: 24385486  |  Reference-DOI: 10.1083/JCB.201308083

(-) Compounds

Molecule 1 - INTEGRIN ALPHA-X
    Chains: A
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK-293
    Expression System Plasmid: ET10
    Expression System Strain: SUSPENSION & GNTI -/-
    Expression System Taxid: 9606
    Expression System Vector Type: STABLE CELL LINES
    Fragment: CD11C
    Gene: ITGAX, CD11C
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CD11 ANTIGEN-LIKE FAMILY MEMBER C, LEU M5, LEUKOCYTE ADHESION GLYCOPROTEIN P150,95 ALPHA CHAIN, LEUKOCYTE ADHESION RECEPTOR P150,95
 
Molecule 2 - INTEGRIN BETA-2
    Chains: B
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK-293
    Expression System Strain: SUSPENSION & GNTI -/-
    Expression System Taxid: 9606
    Expression System Vector Type: PEF-PURO
    Fragment: CD18
    Gene: ITGB2, CD18, MFI7
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CELL SURFACE ADHESION GLYCOPROTEINS LFA-1/CR3/P150,95 SUBUNIT BETA, COMPLEMENT RECEPTOR C3 SUBUNIT BETA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 28)

Asymmetric/Biological Unit (7, 28)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2CA5Ligand/IonCALCIUM ION
3CL1Ligand/IonCHLORIDE ION
4MAN4Ligand/IonALPHA-D-MANNOSE
5MG2Ligand/IonMAGNESIUM ION
6NA1Ligand/IonSODIUM ION
7NAG13Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (28, 28)

Asymmetric Unit (28, 28)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:574 , THR A:576 , ASP A:578 , LEU A:580 , ASP A:582 , HOH A:1204BINDING SITE FOR RESIDUE CA A 1101
02AC2SOFTWARESER A:140 , SER A:142 , THR A:207 , CL A:1120 , HOH A:1245 , HOH A:1268BINDING SITE FOR RESIDUE MG A 1102
03AC3SOFTWAREASP A:511 , ASN A:513 , ASP A:515 , LEU A:517 , ASP A:519 , HOH A:1261BINDING SITE FOR RESIDUE CA A 1103
04AC4SOFTWAREASP A:447 , ASP A:449 , ASP A:451 , SER A:453 , ASP A:455 , HOH A:1311BINDING SITE FOR RESIDUE CA A 1104
05AC5SOFTWARESER A:929 , HIS A:930 , VAL A:931 , ASN A:1031 , NAG A:1106BINDING SITE FOR RESIDUE NAG A 1105
06AC6SOFTWARENAG A:1105BINDING SITE FOR RESIDUE NAG A 1106
07AC7SOFTWAREASN A:70 , NAG A:1108BINDING SITE FOR RESIDUE NAG A 1107
08AC8SOFTWARENAG A:1107 , BMA A:1109BINDING SITE FOR RESIDUE NAG A 1108
09AC9SOFTWARENAG A:1108BINDING SITE FOR RESIDUE BMA A 1109
10BC1SOFTWAREPHE A:354 , SER A:357 , PHE A:371 , ASN A:373 , MET A:374 , SER A:375 , GLN A:376 , ASN A:378 , NAG A:1111BINDING SITE FOR RESIDUE NAG A 1110
11BC2SOFTWAREGLU A:329 , GLN A:376 , NAG A:1110 , BMA A:1112 , MAN A:1113BINDING SITE FOR RESIDUE NAG A 1111
12BC3SOFTWAREGLU A:329 , NAG A:1111 , MAN A:1113 , MAN A:1115BINDING SITE FOR RESIDUE BMA A 1112
13BC4SOFTWARENAG A:1111 , BMA A:1112 , MAN A:1114BINDING SITE FOR RESIDUE MAN A 1113
14BC5SOFTWAREGLN A:376 , MAN A:1113BINDING SITE FOR RESIDUE MAN A 1114
15BC6SOFTWARESER A:327 , GLU A:329 , BMA A:1112 , MAN A:1116BINDING SITE FOR RESIDUE MAN A 1115
16BC7SOFTWARESER A:325 , MAN A:1115BINDING SITE FOR RESIDUE MAN A 1116
17BC8SOFTWARETHR A:657 , ASP A:659 , ASN A:716 , PHE A:717 , THR A:718 , TYR A:741 , NAG A:1118BINDING SITE FOR RESIDUE NAG A 1117
18BC9SOFTWARENAG A:1117BINDING SITE FOR RESIDUE NAG A 1118
19CC1SOFTWARETHR A:801 , ASN A:880BINDING SITE FOR RESIDUE NAG A 1119
20CC2SOFTWARESER A:140 , SER A:142 , GLY A:205 , THR A:207 , MG A:1102BINDING SITE FOR RESIDUE CL A 1120
21CC3SOFTWAREPHE A:328 , GLY A:352 , THR A:355 , TRP A:356BINDING SITE FOR RESIDUE NA A 1121
22CC4SOFTWAREASP B:151 , ASN B:207 , ASP B:209 , PRO B:211 , GLU B:212BINDING SITE FOR RESIDUE CA B 701
23CC5SOFTWAREASP B:120 , GLU B:325 , HOH B:809 , HOH B:812 , HOH B:860 , HOH B:861BINDING SITE FOR RESIDUE CA B 702
24CC6SOFTWAREGLU A:318 , SER B:114 , SER B:116 , GLU B:212 , HOH B:801 , HOH B:821BINDING SITE FOR RESIDUE MG B 703
25CC7SOFTWAREASN B:94 , PHE B:363 , NAG B:705BINDING SITE FOR RESIDUE NAG B 704
26CC8SOFTWAREPHE B:363 , ARG B:371 , NAG B:704BINDING SITE FOR RESIDUE NAG B 705
27CC9SOFTWAREASN B:620 , ALA B:623 , ALA B:624 , NAG B:707BINDING SITE FOR RESIDUE NAG B 706
28DC1SOFTWARENAG B:706BINDING SITE FOR RESIDUE NAG B 707

(-) SS Bonds  (39, 39)

Asymmetric/Biological Unit
No.Residues
1A:50 -A:57
2A:89 -A:107
3A:97 -A:126
4A:476 -A:487
5A:620 -A:703
6A:636 -A:693
7A:752 -A:758
8A:829 -A:844
9A:920 -B:674
10A:979 -A:1013
11A:1003 -A:1008
12B:3 -B:21
13B:11 -B:425
14B:14 -B:40
15B:24 -B:51
16B:169 -B:176
17B:224 -B:264
18B:364 -B:378
19B:398 -B:423
20B:427 -B:445
21B:437 -B:448
22B:450 -B:459
23B:461 -B:492
24B:475 -B:490
25B:484 -B:495
26B:497 -B:512
27B:514 -B:537
28B:519 -B:535
29B:527 -B:540
30B:542 -B:551
31B:553 -B:576
32B:560 -B:574
33B:568 -B:579
34B:581 -B:590
35B:593 -B:596
36B:600 -B:640
37B:606 -B:625
38B:609 -B:621
39B:648 -B:673

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Leu A:119 -Pro A:120
2Arg A:164 -Pro A:165
3Lys A:288 -Pro A:289
4Ile A:609 -Pro A:610
5Ser B:77 -Pro B:78
6Leu B:155 -Pro B:156
7Leu B:587 -Pro B:588

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NEH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NEH)

(-) Exons   (0, 0)

(no "Exon" information available for 4NEH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1084
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee.........eeee...eeeeeeeeeeee..eeeeeeee......eee................eeeee....eeeeeeeeeeeee..eeeeeeeeeee......eee...........eeeeeeee......hhhhhhhhhhhhhhhhh.....eeeeeeee...eeeeehhhhhhh..hhhhh...........hhhhhhhhhhhhh.hhhhh.....eeeeeeee.........hhhhhhhhhhhh.eeeeeee.hhhh.hhhhhhhhhhhh..hhhh.eee....hhhhhhh........hhhhh..............eeeeeeee..eeeeee.hhhhhh..eee.......eee.....hhhhh.......eeeee....eeeeeee.hhhhh.eeeeeeee..eeeeeeeee...........eeee.........eeeeeeeeee....eeeeeeee...........eee..............eeeee........eeeeee.hhhhhh.eeeee.ee...ee.....eeeehhhhh.........eeeee........eeeeee..eeeeee...eeeeeeeeeee...................eeeeeeeeeeeee............eeeeeeeee.........ee......eeeeeeee..eeeeeeeeeee..........eeeeeeeeeee...........ee......eeeeee................eeeee......eee....eeeeeeeee.....eeeeeeeeeee..eee.................eeeeeee....eeeeeeeeeeeee....eeeeeeeeee........eeeeeeeee............eeeeeeeeeee.eeeee......eeeee......eeeeeeeeeeee.....eeeeeeeeeeeee..ee.eeeeeee.........eeeee.....hhhhhhhhh.ee.....eeeeeeeeeeee....eeeeeeeeeee.hhhhhh...eeeeeeeeeee.....eee...hhhh.eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4neh A    1 FNLDTEELTAFRVDSAGFGDSVVQYANSWVVVGAPQKITAADQTGGLYQCGYSTGACEPIGLQVPPEAVNMSLGLSLASTTSPSQLLACGPTVHHECGRNMYLTGLCFLLGPTQLTQRLPVSRQECPRQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFAIEGTETTSSSSFELEMAQEGFSAVFTPDGPVLGAVGSFTWSGGAFLYPPNMDPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPRYQHTGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDAVLYGEQGHPWGRFGAALTVLGDVNGDKLTDVVIGAPGEEENRGAVYLFHGVLGPSISPSHSQRIAGSQLSSRLQYFGQALSGGQDLTQDGLVDLAVGARGQVLLLRTRPVLWVGVSMQFIPAEIPRSAFECREQVVSEQTLVQSNICLYIDKRSKNLLGSRDLQSSVTLDLALDPGRLSPRATFQETKTRSLSRVRVLGLKAHCENFNLLLPSCVEDSVTPITLRLNFTLVGKPLLAFRNLRPMLAADAQRYFTASLPFEKNCGADHICQDNLGISFSFPGLKSLLVGSNLELNAEVMVWNDGEDSYGTTITFSHPAGLSYRYVAEGQKQGQLRSLHLTCDSAPVGSQGTWSTSCRINHLIFRGGAQITFLATFDVSPKAVLGDRLLLTANVSSESNTPRTSKTTFQLELPVKYAVYTVVSSHEQFTKYLCFSESEEKESHVAMHRYQVNNLGQRDLPVSINFWVPVELNQEAVWMDVEVSHPQNPSLRCSSEKIAPPASDFLAHIQKNPVLDCSIAGCLRFRCDVPSFSVQEELDFTLKGNLSFGWVRQILQKKVSVVSVAEITFDTSVYSQLPGQEAFMRAQTTTVLEKYKPG 1084
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080    


Chain B from PDB  Type:PROTEIN  Length:668
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhh...eee...........hhh.ee....hhhhh.....ee....eeee......ee..eeeeee.....eeeeeee.......eeeeeeee.hhhhh....hhhhhhhhhhhhhhhhh..eeeeeeee...........hhhhhhh..............eeeeeeee.hhhhhhhhhhh...........hhhhhhhhhhhhhhhhh....eeeeeeee.......hhhhhhh...............hhhhhh....hhhhhhhhhhhh.eeeeeeee..hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh.eeeee......eeeeeeee.....eeeee..eee........eeeeeeeee......eeeeeee.....eeeeeeee................eee..eee....ee.....ee...................hhhhh.eeee..eeee.......................ee..ee.hhhhheeee..eeee...ee.....ee.................eeee..eeee.................hhhhhhhhhhhhhhhhhhhh.hhhhhh..eeee......eeeeee.....eeeeeeeee....eeeeee......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4neh B    1 QECTKFKVSSCRECIESGPGCTWCQKLNFTGPGDPDSIRCDTRPQLLMRGCAADDIMDPTSLAETQEDQKQLSPQKVTLYLRPGQAAAFNVTFRRAKGYPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPPFAFRHVLKLTDNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRKVTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEIIPKSAVGELSEDSSNVVQLIKNAYNKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESRECCGG  676
                                    10        20        30        40        50        60       |74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424   ||  438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668        
                                                                                              68|                                                                                                                                                                                                                                                                                                                                                                428|                                                                                                                                                                                                                                                   
                                                                                               73                                                                                                                                                                                                                                                                                                                                                                 433
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NEH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NEH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NEH)

(-) Gene Ontology  (48, 61)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    BMA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MAN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Arg A:164 - Pro A:165   [ RasMol ]  
    Ile A:609 - Pro A:610   [ RasMol ]  
    Leu A:119 - Pro A:120   [ RasMol ]  
    Leu B:155 - Pro B:156   [ RasMol ]  
    Leu B:587 - Pro B:588   [ RasMol ]  
    Lys A:288 - Pro A:289   [ RasMol ]  
    Ser B:77 - Pro B:78   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4neh
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  ITAX_HUMAN | P20702
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  ITB2_HUMAN | P05107
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  ITAX_HUMAN | P20702
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  ITB2_HUMAN | P05107
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ITAX_HUMAN | P20702: 1n3y 2luv 3k6s 3k71 3k72 4nen 5es4
        ITB2_HUMAN | P05107: 1jx3 1l3y 1yuk 2jf1 2p26 2p28 2v7d 3k6s 3k71 3k72 4nen 5e6r 5e6s 5e6u 5e6v 5e6w 5e6x 5es4

(-) Related Entries Specified in the PDB File

2iue THE HOMOLOG
3k6s THE BEND AND CLOSED STRUCTURE OF AXB2
3k71 THE BEND AND CLOSED STRUCTURE OF AXB2
3k7s THE BEND AND CLOSED STRUCTURE OF AXB2