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(-) Description

Title :  STRUCTURE AND BINDING INTERFACE OF THE CYTOSOLIC TAILS OF AXB2 INTEGRIN
 
Authors :  G. L. Chua, X. Tang, T. A. Patra, S. M. Tan, S. Bhattacharjya
Date :  21 Jun 12  (Deposition) - 04 Jul 12  (Release) - 04 Jul 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Myristoylated, Dpc Micelles, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. L. Chua, X. Tang, T. A. Patra, S. M. Tan, S. Bhattacharjya
Structure And Binding Interface Of The Cytosolic Tails Of Axb2 Integrin
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - INTEGRIN ALPHA-X
    ChainsA
    EngineeredYES
    FragmentCYTOPLASMIC DOMAIN, UNP RESIDUES 1129-1163
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCD11 ANTIGEN-LIKE FAMILY MEMBER C, LEU M5, LEUKOCYTE ADHESION GLYCOPROTEIN P150,95 ALPHA CHAIN, LEUKOCYTE ADHESION RECEPTOR P150,95
    SyntheticYES

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2LUV)

(-) Sites  (0, 0)

(no "Site" information available for 2LUV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2LUV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2LUV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2LUV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2LUV)

(-) Exons   (2, 2)

NMR Structure (2, 2)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002682961ENSE00002161727chr16:31366509-31366612104ITAX_HUMAN1-13130--
1.2ENST000002682962ENSE00001700348chr16:31367214-31367319106ITAX_HUMAN13-48360--
1.3ENST000002682963ENSE00001655758chr16:31367946-31368049104ITAX_HUMAN48-83360--
1.4ENST000002682964ENSE00001765995chr16:31368352-3136842271ITAX_HUMAN83-106240--
1.5ENST000002682965ENSE00001738489chr16:31368574-31368685112ITAX_HUMAN107-144380--
1.6ENST000002682966ENSE00001681517chr16:31371021-31371151131ITAX_HUMAN144-187440--
1.7ENST000002682967ENSE00001787655chr16:31371241-31371386146ITAX_HUMAN188-236490--
1.8ENST000002682968ENSE00001794926chr16:31371631-31371784154ITAX_HUMAN236-287520--
1.9ENST000002682969ENSE00001772645chr16:31372384-31372534151ITAX_HUMAN288-338510--
1.10ENST0000026829610ENSE00001761178chr16:31373157-3137323074ITAX_HUMAN338-362250--
1.11ENST0000026829611ENSE00001770549chr16:31373396-31373525130ITAX_HUMAN363-406440--
1.12ENST0000026829612ENSE00001689564chr16:31373932-31374074143ITAX_HUMAN406-453480--
1.13ENST0000026829613ENSE00001631428chr16:31374256-31374396141ITAX_HUMAN454-500470--
1.14ENST0000026829614ENSE00001773966chr16:31374486-31374695210ITAX_HUMAN501-570700--
1.15ENST0000026829615ENSE00001786232chr16:31382405-31382535131ITAX_HUMAN571-614440--
1.16ENST0000026829616ENSE00001778190chr16:31382655-31382818164ITAX_HUMAN614-669560--
1.17ENST0000026829617ENSE00001724430chr16:31382951-31383105155ITAX_HUMAN669-720520--
1.18ENST0000026829618ENSE00001660734chr16:31383699-31383830132ITAX_HUMAN721-764440--
1.19ENST0000026829619ENSE00001665346chr16:31383918-3138399174ITAX_HUMAN765-789250--
1.20ENST0000026829620ENSE00000944391chr16:31384570-31384711142ITAX_HUMAN789-836480--
1.21ENST0000026829621ENSE00001361752chr16:31388120-31388236117ITAX_HUMAN837-875390--
1.22ENST0000026829622ENSE00000944393chr16:31388321-3138840080ITAX_HUMAN876-902270--
1.23ENST0000026829623ENSE00000944394chr16:31388503-3138858684ITAX_HUMAN902-930290--
1.24ENST0000026829624ENSE00000944395chr16:31390889-3139096779ITAX_HUMAN930-956270--
1.25ENST0000026829625ENSE00000944396chr16:31391078-31391185108ITAX_HUMAN957-992360--
1.26ENST0000026829626ENSE00000944397chr16:31391303-3139138684ITAX_HUMAN993-1020280--
1.27ENST0000026829627ENSE00001698612chr16:31391587-31391700114ITAX_HUMAN1021-1058380--
1.28ENST0000026829628ENSE00001662024chr16:31391844-31391945102ITAX_HUMAN1059-1092340--
1.29ENST0000026829629ENSE00000944400chr16:31392218-31392328111ITAX_HUMAN1093-1129371A:1-11
1.30ENST0000026829630ENSE00001389530chr16:31393124-313943181195ITAX_HUMAN1130-1163341A:2-3534

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:35
 aligned with ITAX_HUMAN | P20702 from UniProtKB/Swiss-Prot  Length:1163

    Alignment length:35
                                  1138      1148      1158     
          ITAX_HUMAN   1129 KVGFFKRQYKEMMEEANGQIAPENGTQTPSPPSEK 1163
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
               Transcript 1 1Exon 1.30  PDB: A:2-35             Transcript 1
                2luv A    1 KVGFFKRQYKEMMEEANGQIAPENGTQTPSPPSEK   35
                                    10        20        30     

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LUV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LUV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LUV)

(-) Gene Ontology  (15, 15)

NMR Structure(hide GO term definitions)
Chain A   (ITAX_HUMAN | P20702)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004872    receptor activity    Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
biological process
    GO:0009887    animal organ morphogenesis    Morphogenesis of an animal organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0030198    extracellular matrix organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.
    GO:0034113    heterotypic cell-cell adhesion    The attachment of a cell to a cell of a different type via adhesion molecules.
    GO:0007229    integrin-mediated signaling pathway    A series of molecular signals initiated by the binding of extracellular ligand to an integrin on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0050900    leukocyte migration    The movement of a leukocyte within or between different tissues and organs of the body.
    GO:1903955    positive regulation of protein targeting to mitochondrion    Any process that activates or increases the frequency, rate or extent of protein targeting to mitochondrion.
cellular component
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0008305    integrin complex    A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ITAX_HUMAN | P207021n3y 3k6s 3k71 3k72 4neh 4nen 5es4

(-) Related Entries Specified in the PDB File

2lke MYRISTOYLATED ALPHAM IN DODECYLPHOSPHOLINE MICELLES
2lkj MYRISTOYLATED ALPHAM SER PHOSPHORYLATED IN DODECYLPHOSPHOLINE MICELLES RELATED ID: 18542 RELATED DB: BMRB