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Sequence, Chains, Asymmetric and Biological Units

Title AN INTERNAL LIGAND-BOUND, METASTABLE STATE OF A LEUKOCYTE IN AXB2
Keywords ROSSMANN FOLD, COMPLEMENT RECEPTOR, IC3B, ICAM-1, FIBRINOGEN DENATURATED PROTEINS, HEPARIN, N-LINKED GLYCOSYLATION, MEMB CELL ADHESION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4NEH     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   INTEGRIN ALPHA-X  A 1084 8387 0
2  Protein   INTEGRIN BETA-2  B 668 5121 0
3  Ligand    C 2 0 28
4  Ligand    D 3 0 39
5  Ligand    E 7 0 83
6  Ligand    F 2 0 28
7  Ligand    G 2 0 28
8  Ligand    H 2 0 28
9  Ligand   INTEGRIN ALPHA-X  A 7 0 20
10  Ligand   INTEGRIN BETA-2  B 3 0 3
11 Water     308 0 308
total       2088 13508 565
Proteins
Unit 1 PHE1 ASN2 LEU3 ASP4 THR5 GLU6 GLU7 LEU8 THR9 ALA10 PHE11 ARG12 VAL13 ASP14 SER15 ALA16 GLY17 PHE18 GLY19 ASP20 SER21 VAL22 VAL23 GLN24 TYR25 ALA26 ASN27 SER28 TRP29 VAL30 VAL31 VAL32 GLY33 ALA34 PRO35 GLN36 LYS37 ILE38 THR39 ALA40 ALA41 ASP42 GLN43 THR44 GLY45 GLY46 LEU47 TYR48 GLN49 CYS50 GLY51 TYR52 SER53 THR54 GLY55 ALA56 CYS57 GLU58 PRO59 ILE60 GLY61 LEU62 GLN63 VAL64 PRO65 PRO66 GLU67 ALA68 VAL69 ASN70 MET71 SER72 LEU73 GLY74 LEU75 SER76 LEU77 ALA78 SER79 THR80 THR81 SER82 PRO83 SER84 GLN85 LEU86 LEU87 ALA88 CYS89 GLY90 PRO91 THR92 VAL93 HIS94 HIS95 GLU96 CYS97 GLY98 ARG99 ASN100 MET101 TYR102 LEU103 THR104 GLY105 LEU106 CYS107 PHE108 LEU109 LEU110 GLY111 PRO112 THR113 GLN114 LEU115 THR116 GLN117 ARG118 LEU119 PRO120 VAL121 SER122 ARG123 GLN124 GLU125 CYS126 PRO127 ARG128 GLN129 GLU130 GLN131 ASP132 ILE133 VAL134 PHE135 LEU136 ILE137 ASP138 GLY139 SER140 GLY141 SER142 ILE143 SER144 SER145 ARG146 ASN147 PHE148 ALA149 THR150 MET151 MET152 ASN153 PHE154 VAL155 ARG156 ALA157 VAL158 ILE159 SER160 GLN161 PHE162 GLN163 ARG164 PRO165 SER166 THR167 GLN168 PHE169 SER170 LEU171 MET172 GLN173 PHE174 SER175 ASN176 LYS177 PHE178 GLN179 THR180 HIS181 PHE182 THR183 PHE184 GLU185 GLU186 PHE187 ARG188 ARG189 SER190 SER191 ASN192 PRO193 LEU194 SER195 LEU196 LEU197 ALA198 SER199 VAL200 HIS201 GLN202 LEU203 GLN204 GLY205 PHE206 THR207 TYR208 THR209 ALA210 THR211 ALA212 ILE213 GLN214 ASN215 VAL216 VAL217 HIS218 ARG219 LEU220 PHE221 HIS222 ALA223 SER224 TYR225 GLY226 ALA227 ARG228 ARG229 ASP230 ALA231 ALA232 LYS233 ILE234 LEU235 ILE236 VAL237 ILE238 THR239 ASP240 GLY241 LYS242 LYS243 GLU244 GLY245 ASP246 SER247 LEU248 ASP249 TYR250 LYS251 ASP252 VAL253 ILE254 PRO255 MET256 ALA257 ASP258 ALA259 ALA260 GLY261 ILE262 ILE263 ARG264 TYR265 ALA266 ILE267 GLY268 VAL269 GLY270 LEU271 ALA272 PHE273 GLN274 ASN275 ARG276 ASN277 SER278 TRP279 LYS280 GLU281 LEU282 ASN283 ASP284 ILE285 ALA286 SER287 LYS288 PRO289 SER290 GLN291 GLU292 HIS293 ILE294 PHE295 LYS296 VAL297 GLU298 ASP299 PHE300 ASP301 ALA302 LEU303 LYS304 ASP305 ILE306 GLN307 ASN308 GLN309 LEU310 LYS311 GLU312 LYS313 ILE314 PHE315 ALA316 ILE317 GLU318 GLY319 THR320 GLU321 THR322 THR323 SER324 SER325 SER326 SER327 PHE328 GLU329 LEU330 GLU331 MET332 ALA333 GLN334 GLU335 GLY336 PHE337 SER338 ALA339 VAL340 PHE341 THR342 PRO343 ASP344 GLY345 PRO346 VAL347 LEU348 GLY349 ALA350 VAL351 GLY352 SER353 PHE354 THR355 TRP356 SER357 GLY358 GLY359 ALA360 PHE361 LEU362 TYR363 PRO364 PRO365 ASN366 MET367 ASP368 PRO369 THR370 PHE371 ILE372 ASN373 MET374 SER375 GLN376 GLU377 ASN378 VAL379 ASP380 MET381 ARG382 ASP383 SER384 TYR385 LEU386 GLY387 TYR388 SER389 THR390 GLU391 LEU392 ALA393 LEU394 TRP395 LYS396 GLY397 VAL398 GLN399 SER400 LEU401 VAL402 LEU403 GLY404 ALA405 PRO406 ARG407 TYR408 GLN409 HIS410 THR411 GLY412 LYS413 ALA414 VAL415 ILE416 PHE417 THR418 GLN419 VAL420 SER421 ARG422 GLN423 TRP424 ARG425 MET426 LYS427 ALA428 GLU429 VAL430 THR431 GLY432 THR433 GLN434 ILE435 GLY436 SER437 TYR438 PHE439 GLY440 ALA441 SER442 LEU443 CYS444 SER445 VAL446 ASP447 VAL448 ASP449 SER450 ASP451 GLY452 SER453 THR454 ASP455 LEU456 VAL457 LEU458 ILE459 GLY460 ALA461 PRO462 HIS463 TYR464 TYR465 GLU466 GLN467 THR468 ARG469 GLY470 GLY471 GLN472 VAL473 SER474 VAL475 CYS476 PRO477 LEU478 PRO479 ARG480 GLY481 TRP482 ARG483 ARG484 TRP485 TRP486 CYS487 ASP488 ALA489 VAL490 LEU491 TYR492 GLY493 GLU494 GLN495 GLY496 HIS497 PRO498 TRP499 GLY500 ARG501 PHE502 GLY503 ALA504 ALA505 LEU506 THR507 VAL508 LEU509 GLY510 ASP511 VAL512 ASN513 GLY514 ASP515 LYS516 LEU517 THR518 ASP519 VAL520 VAL521 ILE522 GLY523 ALA524 PRO525 GLY526 GLU527 GLU528 GLU529 ASN530 ARG531 GLY532 ALA533 VAL534 TYR535 LEU536 PHE537 HIS538 GLY539 VAL540 LEU541 GLY542 PRO543 SER544 ILE545 SER546 PRO547 SER548 HIS549 SER550 GLN551 ARG552 ILE553 ALA554 GLY555 SER556 GLN557 LEU558 SER559 SER560 ARG561 LEU562 GLN563 TYR564 PHE565 GLY566 GLN567 ALA568 LEU569 SER570 GLY571 GLY572 GLN573 ASP574 LEU575 THR576 GLN577 ASP578 GLY579 LEU580 VAL581 ASP582 LEU583 ALA584 VAL585 GLY586 ALA587 ARG588 GLY589 GLN590 VAL591 LEU592 LEU593 LEU594 ARG595 THR596 ARG597 PRO598 VAL599 LEU600 TRP601 VAL602 GLY603 VAL604 SER605 MET606 GLN607 PHE608 ILE609 PRO610 ALA611 GLU612 ILE613 PRO614 ARG615 SER616 ALA617 PHE618 GLU619 CYS620 ARG621 GLU622 GLN623 VAL624 VAL625 SER626 GLU627 GLN628 THR629 LEU630 VAL631 GLN632 SER633 ASN634 ILE635 CYS636 LEU637 TYR638 ILE639 ASP640 LYS641 ARG642 SER643 LYS644 ASN645 LEU646 LEU647 GLY648 SER649 ARG650 ASP651 LEU652 GLN653 SER654 SER655 VAL656 THR657 LEU658 ASP659 LEU660 ALA661 LEU662 ASP663 PRO664 GLY665 ARG666 LEU667 SER668 PRO669 ARG670 ALA671 THR672 PHE673 GLN674 GLU675 THR676 LYS677 THR678 ARG679 SER680 LEU681 SER682 ARG683 VAL684 ARG685 VAL686 LEU687 GLY688 LEU689 LYS690 ALA691 HIS692 CYS693 GLU694 ASN695 PHE696 ASN697 LEU698 LEU699 LEU700 PRO701 SER702 CYS703 VAL704 GLU705 ASP706 SER707 VAL708 THR709 PRO710 ILE711 THR712 LEU713 ARG714 LEU715 ASN716 PHE717 THR718 LEU719 VAL720 GLY721 LYS722 PRO723 LEU724 LEU725 ALA726 PHE727 ARG728 ASN729 LEU730 ARG731 PRO732 MET733 LEU734 ALA735 ALA736 ASP737 ALA738 GLN739 ARG740 TYR741 PHE742 THR743 ALA744 SER745 LEU746 PRO747 PHE748 GLU749 LYS750 ASN751 CYS752 GLY753 ALA754 ASP755 HIS756 ILE757 CYS758 GLN759 ASP760 ASN761 LEU762 GLY763 ILE764 SER765 PHE766 SER767 PHE768 PRO769 GLY770 LEU771 LYS772 SER773 LEU774 LEU775 VAL776 GLY777 SER778 ASN779 LEU780 GLU781 LEU782 ASN783 ALA784 GLU785 VAL786 MET787 VAL788 TRP789 ASN790 ASP791 GLY792 GLU793 ASP794 SER795 TYR796 GLY797 THR798 THR799 ILE800 THR801 PHE802 SER803 HIS804 PRO805 ALA806 GLY807 LEU808 SER809 TYR810 ARG811 TYR812 VAL813 ALA814 GLU815 GLY816 GLN817 LYS818 GLN819 GLY820 GLN821 LEU822 ARG823 SER824 LEU825 HIS826 LEU827 THR828 CYS829 ASP830 SER831 ALA832 PRO833 VAL834 GLY835 SER836 GLN837 GLY838 THR839 TRP840 SER841 THR842 SER843 CYS844 ARG845 ILE846 ASN847 HIS848 LEU849 ILE850 PHE851 ARG852 GLY853 GLY854 ALA855 GLN856 ILE857 THR858 PHE859 LEU860 ALA861 THR862 PHE863 ASP864 VAL865 SER866 PRO867 LYS868 ALA869 VAL870 LEU871 GLY872 ASP873 ARG874 LEU875 LEU876 LEU877 THR878 ALA879 ASN880 VAL881 SER882 SER883 GLU884 SER885 ASN886 THR887 PRO888 ARG889 THR890 SER891 LYS892 THR893 THR894 PHE895 GLN896 LEU897 GLU898 LEU899 PRO900 VAL901 LYS902 TYR903 ALA904 VAL905 TYR906 THR907 VAL908 VAL909 SER910 SER911 HIS912 GLU913 GLN914 PHE915 THR916 LYS917 TYR918 LEU919 CYS920 PHE921 SER922 GLU923 SER924 GLU925 GLU926 LYS927 GLU928 SER929 HIS930 VAL931 ALA932 MET933 HIS934 ARG935 TYR936 GLN937 VAL938 ASN939 ASN940 LEU941 GLY942 GLN943 ARG944 ASP945 LEU946 PRO947 VAL948 SER949 ILE950 ASN951 PHE952 TRP953 VAL954 PRO955 VAL956 GLU957 LEU958 ASN959 GLN960 GLU961 ALA962 VAL963 TRP964 MET965 ASP966 VAL967 GLU968 VAL969 SER970 HIS971 PRO972 GLN973 ASN974 PRO975 SER976 LEU977 ARG978 CYS979 SER980 SER981 GLU982 LYS983 ILE984 ALA985 PRO986 PRO987 ALA988 SER989 ASP990 PHE991 LEU992 ALA993 HIS994 ILE995 GLN996 LYS997 ASN998 PRO999 VAL1000 LEU1001 ASP1002 CYS1003 SER1004 ILE1005 ALA1006 GLY1007 CYS1008 LEU1009 ARG1010 PHE1011 ARG1012 CYS1013 ASP1014 VAL1015 PRO1016 SER1017 PHE1018 SER1019 VAL1020 GLN1021 GLU1022 GLU1023 LEU1024 ASP1025 PHE1026 THR1027 LEU1028 LYS1029 GLY1030 ASN1031 LEU1032 SER1033 PHE1034 GLY1035 TRP1036 VAL1037 ARG1038 GLN1039 ILE1040 LEU1041 GLN1042 LYS1043 LYS1044 VAL1045 SER1046 VAL1047 VAL1048 SER1049 VAL1050 ALA1051 GLU1052 ILE1053 THR1054 PHE1055 ASP1056 THR1057 SER1058 VAL1059 TYR1060 SER1061 GLN1062 LEU1063 PRO1064 GLY1065 GLN1066 GLU1067 ALA1068 PHE1069 MET1070 ARG1071 ALA1072 GLN1073 THR1074 THR1075 THR1076 VAL1077 LEU1078 GLU1079 LYS1080 TYR1081 LYS1082 PRO1083 GLY1084
Unit 2 GLN1 GLU2 CYS3 THR4 LYS5 PHE6 LYS7 VAL8 SER9 SER10 CYS11 ARG12 GLU13 CYS14 ILE15 GLU16 SER17 GLY18 PRO19 GLY20 CYS21 THR22 TRP23 CYS24 GLN25 LYS26 LEU27 ASN28 PHE29 THR30 GLY31 PRO32 GLY33 ASP34 PRO35 ASP36 SER37 ILE38 ARG39 CYS40 ASP41 THR42 ARG43 PRO44 GLN45 LEU46 LEU47 MET48 ARG49 GLY50 CYS51 ALA52 ALA53 ASP54 ASP55 ILE56 MET57 ASP58 PRO59 THR60 SER61 LEU62 ALA63 GLU64 THR65 GLN66 GLU67 ASP68 GLN73 LYS74 GLN75 LEU76 SER77 PRO78 GLN79 LYS80 VAL81 THR82 LEU83 TYR84 LEU85 ARG86 PRO87 GLY88 GLN89 ALA90 ALA91 ALA92 PHE93 ASN94 VAL95 THR96 PHE97 ARG98 ARG99 ALA100 LYS101 GLY102 TYR103 PRO104 ILE105 ASP106 LEU107 TYR108 TYR109 LEU110 MET111 ASP112 LEU113 SER114 TYR115 SER116 MET117 LEU118 ASP119 ASP120 LEU121 ARG122 ASN123 VAL124 LYS125 LYS126 LEU127 GLY128 GLY129 ASP130 LEU131 LEU132 ARG133 ALA134 LEU135 ASN136 GLU137 ILE138 THR139 GLU140 SER141 GLY142 ARG143 ILE144 GLY145 PHE146 GLY147 SER148 PHE149 VAL150 ASP151 LYS152 THR153 VAL154 LEU155 PRO156 PHE157 VAL158 ASN159 THR160 HIS161 PRO162 ASP163 LYS164 LEU165 ARG166 ASN167 PRO168 CYS169 PRO170 ASN171 LYS172 GLU173 LYS174 GLU175 CYS176 GLN177 PRO178 PRO179 PHE180 ALA181 PHE182 ARG183 HIS184 VAL185 LEU186 LYS187 LEU188 THR189 ASP190 ASN191 SER192 ASN193 GLN194 PHE195 GLN196 THR197 GLU198 VAL199 GLY200 LYS201 GLN202 LEU203 ILE204 SER205 GLY206 ASN207 LEU208 ASP209 ALA210 PRO211 GLU212 GLY213 GLY214 LEU215 ASP216 ALA217 MET218 MET219 GLN220 VAL221 ALA222 ALA223 CYS224 PRO225 GLU226 GLU227 ILE228 GLY229 TRP230 ARG231 LYS232 VAL233 THR234 ARG235 LEU236 LEU237 VAL238 PHE239 ALA240 THR241 ASP242 ASP243 GLY244 PHE245 HIS246 PHE247 ALA248 GLY249 ASP250 GLY251 LYS252 LEU253 GLY254 ALA255 ILE256 LEU257 THR258 PRO259 ASN260 ASP261 GLY262 ARG263 CYS264 HIS265 LEU266 GLU267 ASP268 ASN269 LEU270 TYR271 LYS272 ARG273 SER274 ASN275 GLU276 PHE277 ASP278 TYR279 PRO280 SER281 VAL282 GLY283 GLN284 LEU285 ALA286 HIS287 LYS288 LEU289 ALA290 GLU291 ASN292 ASN293 ILE294 GLN295 PRO296 ILE297 PHE298 ALA299 VAL300 THR301 SER302 ARG303 MET304 VAL305 LYS306 THR307 TYR308 GLU309 LYS310 LEU311 THR312 GLU313 ILE314 ILE315 PRO316 LYS317 SER318 ALA319 VAL320 GLY321 GLU322 LEU323 SER324 GLU325 ASP326 SER327 SER328 ASN329 VAL330 VAL331 GLN332 LEU333 ILE334 LYS335 ASN336 ALA337 TYR338 ASN339 LYS340 LEU341 SER342 SER343 ARG344 VAL345 PHE346 LEU347 ASP348 HIS349 ASN350 ALA351 LEU352 PRO353 ASP354 THR355 LEU356 LYS357 VAL358 THR359 TYR360 ASP361 SER362 PHE363 CYS364 SER365 ASN366 GLY367 VAL368 THR369 HIS370 ARG371 ASN372 GLN373 PRO374 ARG375 GLY376 ASP377 CYS378 ASP379 GLY380 VAL381 GLN382 ILE383 ASN384 VAL385 PRO386 ILE387 THR388 PHE389 GLN390 VAL391 LYS392 VAL393 THR394 ALA395 THR396 GLU397 CYS398 ILE399 GLN400 GLU401 GLN402 SER403 PHE404 VAL405 ILE406 ARG407 ALA408 LEU409 GLY410 PHE411 THR412 ASP413 ILE414 VAL415 THR416 VAL417 GLN418 VAL419 LEU420 PRO421 GLN422 CYS423 GLU424 CYS425 ARG426 CYS427 ARG428 ASP433 ARG434 SER435 LEU436 CYS437 HIS438 GLY439 LYS440 GLY441 PHE442 LEU443 GLU444 CYS445 GLY446 ILE447 CYS448 ARG449 CYS450 ASP451 THR452 GLY453 TYR454 ILE455 GLY456 LYS457 ASN458 CYS459 GLU460 CYS461 GLN462 THR463 GLN464 GLY465 ARG466 SER467 SER468 GLN469 GLU470 LEU471 GLU472 GLY473 SER474 CYS475 ARG476 LYS477 ASP478 ASN479 ASN480 SER481 ILE482 ILE483 CYS484 SER485 GLY486 LEU487 GLY488 ASP489 CYS490 VAL491 CYS492 GLY493 GLN494 CYS495 LEU496 CYS497 HIS498 THR499 SER500 ASP501 VAL502 PRO503 GLY504 LYS505 LEU506 ILE507 TYR508 GLY509 GLN510 TYR511 CYS512 GLU513 CYS514 ASP515 THR516 ILE517 ASN518 CYS519 GLU520 ARG521 TYR522 ASN523 GLY524 GLN525 VAL526 CYS527 GLY528 GLY529 PRO530 GLY531 ARG532 GLY533 LEU534 CYS535 PHE536 CYS537 GLY538 LYS539 CYS540 ARG541 CYS542 HIS543 PRO544 GLY545 PHE546 GLU547 GLY548 SER549 ALA550 CYS551 GLN552 CYS553 GLU554 ARG555 THR556 THR557 GLU558 GLY559 CYS560 LEU561 ASN562 PRO563 ARG564 ARG565 VAL566 GLU567 CYS568 SER569 GLY570 ARG571 GLY572 ARG573 CYS574 ARG575 CYS576 ASN577 VAL578 CYS579 GLU580 CYS581 HIS582 SER583 GLY584 TYR585 GLN586 LEU587 PRO588 LEU589 CYS590 GLN591 GLU592 CYS593 PRO594 GLY595 CYS596 PRO597 SER598 PRO599 CYS600 GLY601 LYS602 TYR603 ILE604 SER605 CYS606 ALA607 GLU608 CYS609 LEU610 LYS611 PHE612 GLU613 LYS614 GLY615 PRO616 PHE617 GLY618 LYS619 ASN620 CYS621 SER622 ALA623 ALA624 CYS625 PRO626 GLY627 LEU628 GLN629 LEU630 SER631 ASN632 ASN633 PRO634 VAL635 LYS636 GLY637 ARG638 THR639 CYS640 LYS641 GLU642 ARG643 ASP644 SER645 GLU646 GLY647 CYS648 TRP649 VAL650 ALA651 TYR652 THR653 LEU654 GLU655 GLN656 GLN657 ASP658 GLY659 MET660 ASP661 ARG662 TYR663 LEU664 ILE665 TYR666 VAL667 ASP668 GLU669 SER670 ARG671 GLU672 CYS673 CYS674 GLY675 GLY676
Ligands
Unit 3 NAG1 NAG2
Unit 4 NAG1 NAG2 BMA3
Unit 5 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7
Unit 6 NAG1 NAG2
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2
Unit 9 CA1101 MG1102 CA1103 CA1104 NAG1119 CL1120 NA1121
Unit 10 CA701 CA702 MG703
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany