4MCT - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   P. VULGARIS HIGBA STRUCTURE, CRYSTAL FORM 1

Authors :   M. A. Schureck, T. Maehigashi, C. M. Dunham

Date :   21 Aug 13 (Deposition) - 11 Dec 13 (Release) - 29 Jan 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Bacterial Toxins, Biofilms, Cell Metabolism, Energy Metabolism, Helix-Turn-Helix Transcription Factors, Microbial Pathogenesis, Stress Response, Stringent Response, Transcription Repressor, Translation Control, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. A. Schureck, T. Maehigashi, S. J. Miles, J. Marquez, S. E. Cho, R. Erdman, C. M. Dunham
Structure Of The Proteus Vulgaris Higb-(Higa)2-Higb Toxin-Antitoxin Complex.
J. Biol. Chem. V. 289 1060 2014
PubMed-ID: 24257752 | Reference-DOI: 10.1074/JBC.M113.512095

Molecule 1 - ANTIDOTE PROTEIN
	Chains	:	A, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET21C
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	HIGA
	Organism Scientific	:	PROTEUS VULGARIS
	Organism Taxid	:	585
	Strain	:	UR-75
	Synonym	:	HOST INHIBITION OF GROWTH A

Molecule 2 - KILLER PROTEIN
	Chains	:	B, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET21C
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	HIGB
	Organism Scientific	:	PROTEUS VULGARIS
	Organism Taxid	:	585
	Strain	:	UR-75
	Synonym	:	HOST INHIBITION OF GROWTH B

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 10)

No.	Name	Count	Type	Full Name
1	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 4MCT)

(no "SS Bond" information available for 4MCT)

Asymmetric/Biological Unit

No.	Residues
1	Ser A:86	-	Gly A:87
2	Lys B:57	-	Gly B:58
3	Gly B:58	-	Asp B:59
4	Ser C:86	-	Gly C:87

(no "SAP(SNP)/Variant" information available for 4MCT)

(no "PROSITE Motif" information available for 4MCT)

(no "Exon" information available for 4MCT)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:92
                                                                                                                           
               SCOP domains d4mcta_ A: Antitoxin HigA                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  4mct A  1 mRQFKVSHPGEmIARDLEDmGVSGRRFAHNIGVTPATVSRLLAGKTALTPSLSIRIAAALGSTPEFWLRLQSNYDLRQLENQIDTSGIVLYG 92
                            |       10 |      20        30        40        50        60        70        80        90  
                            |         12-MSE  20-MSE                                                                    
                            1-MSE

Chain B from PDB  Type:PROTEIN  Length:91
                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhh........hhhhhhhhhhhhhhh..hhhhhhhhhh.ee.......eeeeeee..eeeeeeee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  4mct B  0 mmIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKGDREGYWSITVRANWRITFQFINGDAYILNYED 90
                            ||       9        19        29        39        49        59        69        79        89 
                            0-MSE                                                                                      
                             1-MSE

Chain C from PDB  Type:PROTEIN  Length:93
                                                                                                                            
               SCOP domains d4mctc_ C: Antitoxin HigA                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                  4mct C  1 mRQFKVSHPGEmIARDLEDmGVSGRRFAHNIGVTPATVSRLLAGKTALTPSLSIRIAAALGSTPEFWLRLQSNYDLRQLENQIDTSGIVLYGE 93
                            |       10 |      20        30        40        50        60        70        80        90   
                            1-MSE     12-MSE  20-MSE

Chain D from PDB  Type:PROTEIN  Length:93
                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.ee.......eeeeeee..eeeeeeee..eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                  4mct D  0 mmIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKGDREGYWSITVRANWRITFQFINGDAYILNYEDYH 92
                            ||       9        19        29        39        49        59        69        79        89   
                            0-MSE                                                                                        
                             1-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: lambda repressor-like DNA-binding domains (180)

Superfamily: lambda repressor-like DNA-binding domains (180)

Family: SinR domain-like (36)

Protein domain: Antitoxin HigA (4)

Proteus vulgaris [TaxId: 585] (2)

1a	d4mcta_	A:
1b	d4mctc_	C:

(no "CATH Domain" information available for 4MCT)

(no "Pfam Domain" information available for 4MCT)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Sites
(no "Sites" information available for 4mct)

	Cis Peptide Bonds
		Gly B:58 - Asp B:59	[ RasMol ]
		Lys B:57 - Gly B:58	[ RasMol ]
		Ser A:86 - Gly A:87	[ RasMol ]
		Ser C:86 - Gly C:87	[ RasMol ]

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	4mct
		Family and Domain Information	:	ProDom \| SYSTERS
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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	HIGA_PROVU \| Q7A224
		Comparative Protein Structure Models	:	ModBase
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	HIGB_PROVU \| Q7A225
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		Disease Information	:	OMIM

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		Interatomic Contacts of Structural Units	:	CSU
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	HIGA_PROVU \| Q7A224
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	HIGB_PROVU \| Q7A225
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	HIGA_PROVU \| Q7A224	:	4mcx
	HIGB_PROVU \| Q7A225	:	4mcx 4px8 4w4g 4ypb 4yy3 4yzv 4zsn 5iwh 5ixl

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 10)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (23, 24)

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Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File