4MCX - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   P. VULGARIS HIGBA STRUCTURE, CRYSTAL FORM 2

Authors :   M. A. Schureck, T. Maehigashi, C. M. Dunham

Date :   21 Aug 13 (Deposition) - 11 Dec 13 (Release) - 29 Jan 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: E,F  (2x)

Keywords :   Bacterial Toxins, Biofilms, Cell Metabolism, Energy Metabolism, Helix-Turn-Helix Transcription Factors, Microbial Pathogenesis, Stress Response, Stringent Response, Transcription Repressor, Translation Control, Antitoxin, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. A. Schureck, T. Maehigashi, S. J. Miles, J. Marquez, S. E. Cho, R. Erdman, C. M. Dunham
Structure Of The Proteus Vulgaris Higb-(Higa)2-Higb Toxin-Antitoxin Complex.
J. Biol. Chem. V. 289 1060 2014
PubMed-ID: 24257752 | Reference-DOI: 10.1074/JBC.M113.512095

Molecule 1 - ANTIDOTE PROTEIN
	Chains	:	A, C, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	HIGA
	Organism Scientific	:	PROTEUS VULGARIS
	Organism Taxid	:	585
	Strain	:	UR-75
	Synonym	:	HOST INHIBITION OF GROWTH A

Molecule 2 - KILLER PROTEIN
	Chains	:	B, D, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	HIGB
	Organism Scientific	:	PROTEUS VULGARIS
	Organism Taxid	:	585
	Strain	:	UR-75
	Synonym	:	HOST INHIBITION OF GROWTH B

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (2x)	:					E	F

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 4MCX)

(no "Site" information available for 4MCX)

(no "SS Bond" information available for 4MCX)

(no "Cis Peptide Bond" information available for 4MCX)

(no "SAP(SNP)/Variant" information available for 4MCX)

(no "PROSITE Motif" information available for 4MCX)

(no "Exon" information available for 4MCX)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:93
                                                                                                                            
               SCOP domains d4mcxa_ A: Antitoxin HigA                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                  4mcx A  1 MRQFKVSHPGEMIARDLEDMGVSGRRFAHNIGVTPATVSRLLAGKTALTPSLSIRIAAALGSTPEFWLRLQSNYDLRQLENQIDTSGIVLYGE 93
                                    10        20        30        40        50        60        70        80        90

Chain B from PDB  Type:PROTEIN  Length:93
                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.ee........eeeeee..eeeeeeee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                  4mcx B -2 SHMMIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKGDREGYWSITVRANWRITFQFINGDAYILNYED 90
                                     7        17        27        37        47        57        67        77        87

Chain C from PDB  Type:PROTEIN  Length:92
                                                                                                                           
               SCOP domains d4mcxc_ C: Antitoxin HigA                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  4mcx C  1 MRQFKVSHPGEMIARDLEDMGVSGRRFAHNIGVTPATVSRLLAGKTALTPSLSIRIAAALGSTPEFWLRLQSNYDLRQLENQIDTSGIVLYG 92
                                    10        20        30        40        50        60        70        80        90

Chain D from PDB  Type:PROTEIN  Length:92
                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.ee.hhhhh.eeeeeee..eeeeeeee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  4mcx D -1 HMMIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKGDREGYWSITVRANWRITFQFINGDAYILNYED 90
                                     8        18        28        38        48        58        68        78        88

Chain E from PDB  Type:PROTEIN  Length:92
                                                                                                                           
               SCOP domains d4mcxe_ E: Antitoxin HigA                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  4mcx E  1 MRQFKVSHPGEMIARDLEDMGVSGRRFAHNIGVTPATVSRLLAGKTALTPSLSIRIAAALGSTPEFWLRLQSNYDLRQLENQIDTSGIVLYG 92
                                    10        20        30        40        50        60        70        80        90

Chain F from PDB  Type:PROTEIN  Length:91
                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.ee.hhhhh.eeeeeee..eeeeeeee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  4mcx F  0 MMIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKGDREGYWSITVRANWRITFQFINGDAYILNYED 90
                                     9        19        29        39        49        59        69        79        89

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

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Protein Domains( (-)

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Class: All alpha proteins (14657)

Fold: lambda repressor-like DNA-binding domains (180)

Superfamily: lambda repressor-like DNA-binding domains (180)

Family: SinR domain-like (36)

Protein domain: Antitoxin HigA (4)

Proteus vulgaris [TaxId: 585] (2)

1a	d4mcxa_	A:
1b	d4mcxc_	C:
1c	d4mcxe_	E:

(no "CATH Domain" information available for 4MCX)

(no "Pfam Domain" information available for 4MCX)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
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Biological Units
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		Biological Unit 2	[ Jena3D ]

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	4mcx
		Family and Domain Information	:	ProDom \| SYSTERS
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
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	HIGA_PROVU \| Q7A224
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	HIGB_PROVU \| Q7A225
		Comparative Protein Structure Models	:	ModBase
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	HIGA_PROVU \| Q7A224
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	HIGB_PROVU \| Q7A225
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	HIGA_PROVU \| Q7A224	:	4mct
	HIGB_PROVU \| Q7A225	:	4mct 4px8 4w4g 4ypb 4yy3 4yzv 4zsn 5iwh 5ixl

Description

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Ligands, Modified Residues, Ions (0, 0)

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SCOP Domains (1, 3)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (23, 24)

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