5IXL - JenaLib

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Title :   STRUCTURE OF P. VULGARIS HIGB TOXIN Y91A VARIANT

Authors :   M. A. Schureck, A. A. Repack, S. J. Miles, J. Marquez, C. M. Dunham

Date :   23 Mar 16 (Deposition) - 20 Jul 16 (Release) - 05 Oct 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.55

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)
Biol. Unit 7: G  (1x)
Biol. Unit 8: H  (1x)

Keywords :   Bacterial Toxins, Biofilms, Cell Metabolism, Energy Metabolism, Microbial Pathogenesis, Stress Response, Stringent Response, Translation Control, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. A. Schureck, A. Repack, S. J. Miles, J. Marquez, C. M. Dunham
Mechanism Of Endonuclease Cleavage By The Higb Toxin.
Nucleic Acids Res. V. 44 7944 2016
PubMed-ID: 27378776 | Reference-DOI: 10.1093/NAR/GKW598

Molecule 1 - ENDORIBONUCLEASE HIGB
	Chains	:	A, B, C, D, E, F, G, H
	EC Number	:	3.1.-.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BW25113
	Expression System Plasmid	:	PBAD/MYC-HISA
	Expression System Taxid	:	679895
	Expression System Vector Type	:	PLASMID
	Gene	:	HIGB
	Organism Scientific	:	PROTEUS VULGARIS
	Organism Taxid	:	585
	Synonym	:	HOST INHIBITION OF GROWTH PROTEIN B,KILLER PROTEIN,TOXIN HIGB,MRNA INTERFERASE HIGB

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F
Biological Unit 7 (1x)	:							G
Biological Unit 8 (1x)	:								H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 12)

No.	Name	Count	Type	Full Name
1	CL	12	Ligand/Ion	CHLORIDE ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 5 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 6 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 7 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 8 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE A:5 , LYS A:11	binding site for residue CL A 201
02	AC2	SOFTWARE	PHE B:5 , LYS B:11	binding site for residue CL B 201
03	AC3	SOFTWARE	ILE B:43	binding site for residue CL B 202
04	AC4	SOFTWARE	SER C:4 , PHE C:5 , LYS C:11	binding site for residue CL C 201
05	AC5	SOFTWARE	PHE D:5 , LYS D:11	binding site for residue CL D 201
06	AC6	SOFTWARE	ASN D:80 , TRP G:72	binding site for residue CL D 202
07	AC7	SOFTWARE	PHE E:5 , LYS E:11	binding site for residue CL E 201
08	AC8	SOFTWARE	PHE F:5 , LYS F:11	binding site for residue CL F 201
09	AC9	SOFTWARE	PHE G:5 , LYS G:11	binding site for residue CL G 201
10	AD1	SOFTWARE	PHE H:5 , LYS H:11	binding site for residue CL H 201
11	AD2	SOFTWARE	ILE H:43 , HOH H:353	binding site for residue CL H 202

(no "SS Bond" information available for 5IXL)

(no "Cis Peptide Bond" information available for 5IXL)

(no "SAP(SNP)/Variant" information available for 5IXL)

(no "PROSITE Motif" information available for 5IXL)

(no "Exon" information available for 5IXL)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:99
                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.ee.hhhhh.eeeeeee..eeeeeeee..eeeeeeeee.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                  5ixl A  1 GIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKGDREGYWSITVRANWRITFQFINGDAYILNYEDAHKLGPEQK 99
                                    10        20        30        40        50        60        70        80        90

Chain B from PDB  Type:PROTEIN  Length:98
                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.ee.hhhhh.eeeeeee..eeeeeeee..eeeeeeeee.hhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                  5ixl B  1 GIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKGDREGYWSITVRANWRITFQFINGDAYILNYEDAHKLGPEQ 98
                                    10        20        30        40        50        60        70        80        90

Chain C from PDB  Type:PROTEIN  Length:92
                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.ee.hhhhh.eeeeeee..eeeeeeee..eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  5ixl C  1 GIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKGDREGYWSITVRANWRITFQFINGDAYILNYEDAH 92
                                    10        20        30        40        50        60        70        80        90

Chain D from PDB  Type:PROTEIN  Length:94
                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.ee.hhhhh..eeeeee..eeeeeeee..eeeeeeeee.hhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                  5ixl D  1 GIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKGDREGYWSITVRANWRITFQFINGDAYILNYEDAHKL 94
                                    10        20        30        40        50        60        70        80        90

Chain E from PDB  Type:PROTEIN  Length:98
                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.ee.hhhhh..eeeeee..eeeeeeee..eeeeeeeee.hhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                  5ixl E  1 GIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKGDREGYWSITVRANWRITFQFINGDAYILNYEDAHKLGPEQ 98
                                    10        20        30        40        50        60        70        80        90

Chain F from PDB  Type:PROTEIN  Length:92
                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.ee.hhhhh.eeeeeee..eeeeeeee..eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  5ixl F  1 GIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKGDREGYWSITVRANWRITFQFINGDAYILNYEDAH 92
                                    10        20        30        40        50        60        70        80        90

Chain G from PDB  Type:PROTEIN  Length:98
                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.ee.hhhhh.eeeeeee..eeeeeeee..eeeeeeeee.hhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                  5ixl G  1 GIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKGDREGYWSITVRANWRITFQFINGDAYILNYEDAHKLGPEQ 98
                                    10        20        30        40        50        60        70        80        90

Chain H from PDB  Type:PROTEIN  Length:92
                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.ee.hhhhh.eeeeeee..eeeeeeee..eeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  5ixl H  1 GIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKGDREGYWSITVRANWRITFQFINGDAYILNYEDAH 92
                                    10        20        30        40        50        60        70        80        90

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

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	HIGB_PROVU \| Q7A225	:	4mct 4mcx 4px8 4w4g 4ypb 4yy3 4yzv 4zsn 5iwh

Description

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Ligands, Modified Residues, Ions (1, 12)

Sites (11, 11)

SS Bonds (0, 0)

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