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(-) Description

Title :  TANKYRASE-1 COMPLEXED WITH SMALL MOLECULE INHIBITOR 2-[4-(4-FLUOROBENZOYL)PIPERIDIN-1-YL]-N-[(4-OXO-3,5,7,8-TETRAHYDRO-4H-PYRANO[4,3-D]PYRIMIDIN-2-YL)METHYL]-N-(THIOPHEN-2-YLMETHYL)ACETAMIDE
 
Authors :  C. A. Kirby, T. Stams
Date :  02 Jul 13  (Deposition) - 14 Aug 13  (Release) - 02 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.52
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. D. Shultz, A. K. Cheung, C. A. Kirby, B. Firestone, J. Fan, C. H. Chen, Z. Chen, D. N. Chin, L. Dipietro, A. Fazal, Y. Feng, P. D. Fortin, T. Gould, B. Lagu, H. Lei, F. Lenoir, D. Majumdar, E. Ochala, M. G. Palermo, L. Pham, M. Pu, T. Smith, T. Stams, R. C. Tomlinson, B. B. Toure, M. Visser, R. M. Wang, N. J. Waters, W. Shao
Identification Of Nvp-Tnks656: The Use Of Structure-Efficiency Relationships To Generate A Highly Potent, Selective, And Orally Active Tankyrase Inhibitor.
J. Med. Chem. V. 56 6495 2013
PubMed-ID: 23844574  |  Reference-DOI: 10.1021/JM400807N

(-) Compounds

Molecule 1 - TANKYRASE-1
    Chains: A, B
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: CATALYTIC DOMAIN, UNP RESIDUES 1105-1325
    Gene: TNKS, PARP5A, PARPL, TIN1, TINF1, TNKS1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TANK1, ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 5, ARTD5, POLY [ADP-RIBOSE] POLYMERASE 5A, TNKS-1, TRF1-INTERACTING ANKYRIN-RELATED ADP-RIBOSE POLYMERASE, TANKYRASE I

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
11XQ2Ligand/Ion2-[4-(4-FLUOROBENZOYL)PIPERIDIN-1-YL]-N-[(4-OXO-3,5,7,8-TETRAHYDRO-4H-PYRANO[4,3-D]PYRIMIDIN-2-YL)METHYL]-N-(THIOPHEN-2-YLMETHYL)ACETAMIDE
2SO44Ligand/IonSULFATE ION
3ZN2Ligand/IonZINC ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
11XQ1Ligand/Ion2-[4-(4-FLUOROBENZOYL)PIPERIDIN-1-YL]-N-[(4-OXO-3,5,7,8-TETRAHYDRO-4H-PYRANO[4,3-D]PYRIMIDIN-2-YL)METHYL]-N-(THIOPHEN-2-YLMETHYL)ACETAMIDE
2SO43Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
11XQ1Ligand/Ion2-[4-(4-FLUOROBENZOYL)PIPERIDIN-1-YL]-N-[(4-OXO-3,5,7,8-TETRAHYDRO-4H-PYRANO[4,3-D]PYRIMIDIN-2-YL)METHYL]-N-(THIOPHEN-2-YLMETHYL)ACETAMIDE
2SO41Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:1234 , HIS A:1237 , CYS A:1242 , CYS A:1245BINDING SITE FOR RESIDUE ZN A 1401
2AC2SOFTWAREHIS A:1184 , GLY A:1185 , PHE A:1188 , ALA A:1191 , PHE A:1197 , ASP A:1198 , HIS A:1201 , ALA A:1202 , GLY A:1211 , TYR A:1213 , PHE A:1214 , ALA A:1215 , LYS A:1220 , SER A:1221 , TYR A:1224 , ILE A:1228 , GLU A:1291BINDING SITE FOR RESIDUE 1XQ A 1402
3AC3SOFTWAREHIS A:1176 , HIS A:1177 , ASN A:1178 , GLU A:1179 , HOH A:1533 , HIS B:1176BINDING SITE FOR RESIDUE SO4 A 1403
4AC4SOFTWAREARG A:1130 , HIS A:1132 , ARG A:1133 , LYS A:1220 , GLN A:1223 , HOH A:1531BINDING SITE FOR RESIDUE SO4 A 1404
5AC5SOFTWAREHIS A:1176 , HOH A:1532 , HIS B:1176 , HIS B:1177 , ASN B:1178BINDING SITE FOR RESIDUE SO4 A 1405
6AC6SOFTWARECYS B:1234 , HIS B:1237 , CYS B:1242 , CYS B:1245BINDING SITE FOR RESIDUE ZN B 1401
7AC7SOFTWAREHIS B:1184 , GLY B:1185 , SER B:1186 , PHE B:1188 , ALA B:1191 , ILE B:1192 , PHE B:1197 , ASP B:1198 , HIS B:1201 , ALA B:1202 , GLY B:1211 , TYR B:1213 , PHE B:1214 , ALA B:1215 , LYS B:1220 , SER B:1221 , TYR B:1224 , ILE B:1228 , GLU B:1291BINDING SITE FOR RESIDUE 1XQ B 1402
8AC8SOFTWAREARG B:1130 , HIS B:1132 , ARG B:1133 , LYS B:1220 , GLN B:1223 , HOH B:1503BINDING SITE FOR RESIDUE SO4 B 1403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LI8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LI8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LI8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LI8)

(-) Exons   (0, 0)

(no "Exon" information available for 4LI8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhhhh...............eeeeeeeeeeeehhhhhhhhhhhhhhhhh......eeeeee...hhhhhhhhh............eee..hhhhhhh...hhhhh...............eeeeeeeee...eeee..............eeee...eeee.hhh.eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4li8 A 1105 GTILLDLAPEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSVIGRYAEYVIYRGEQAYPEYLITYQIMKP 1313
                                  1114      1124      1134      1144      1154      1164      1174      1184      1194      1207      1217      1227      1237      1247      1257      1267      1277   || 1294      1304         
                                                                                                                          1202|                                                                       1281|                        
                                                                                                                           1206                                                                        1289                        


Chain B from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhhh...............eeeeeeeeeeehhhhhhhhhhhhhhhhhh......eeeeee...hhhhhhhhh.hhhhh......eee..hhhhhhh...hhhhh...............eeeeeeeee...eeee..............eeee..........eeee.hhh.eeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4li8 B 1105 GTILLDLAPEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPE 1314
                                  1114      1124      1134      1144      1154      1164      1174      1184      1194      1207      1217      1227      1237      1247      1257      1267      1277      1287      1297      1307       
                                                                                                                          1202|                                                                                                            
                                                                                                                           1206
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LI8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LI8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LI8)

(-) Gene Ontology  (46, 46)

Asymmetric Unit(hide GO term definitions)

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        TNKS1_HUMAN | O95271: 2rf5 3udd 3uh2 3uh4 4dvi 4i9i 4k4e 4k4f 4krs 4li6 4li7 4msg 4msk 4mt9 4n3r 4n4v 4oa7 4tor 4tos 4u6a 4uuh 4uw1 4w5s 4w6e 5ebt 5ece 5ety 5gp7 5jhq 5jti 5ju5 5kni

(-) Related Entries Specified in the PDB File

4li6 4li7