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(-) Description

Title :  CRYSTAL STRUCTURE OF TANKYRASE 1 WITH COMPOUND 22
 
Authors :  X. Huang
Date :  18 Sep 13  (Deposition) - 25 Dec 13  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Tankyrase, Parp, Inhibitor, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Hua, H. Bregman, J. L. Buchanan, N. Chakka, A. Guzman-Perez, H. Gunaydin, X. Huang, Y. Gu, V. Berry, J. Liu, Y. Teffera, L. Huang, B. Egge, R. Emkey, E. L. Mullady, S. Schneider, P. S. Andrews, L. Acquaviva, J. Dovey, A. Mishra, J. Newcomb, D. Saffran, R. Serafino C. A. Strathdee, S. M. Turci, M. Stanton, C. Wilson, E. F. Dimauro
Development Of Novel Dual Binders As Potent, Selective, And Orally Bioavailable Tankyrase Inhibitors.
J. Med. Chem. V. 56 10003 2013
PubMed-ID: 24294969  |  Reference-DOI: 10.1021/JM401317Z

(-) Compounds

Molecule 1 - TANKYRASE-1
    Chains: A, B
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1104-1314
    Gene: TNKS, PARP5A, PARPL, TIN1, TINF1, TNKS1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TANK1, ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 5, ARTD5, POLY [ADP-RIBOSE] POLYMERASE 5A, TNKS-1, TRF1-INTERACTING ANKYRIN-RELATED ADP-RIBOSE POLYMERASE, TANKYRASE I

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
12C62Ligand/Ion3-[(4-OXO-3,4-DIHYDROQUINAZOLIN-2-YL)SULFANYL]-N-[TRANS-4-(5-PHENYL-1,3,4-OXADIAZOL-2-YL)CYCLOHEXYL]PROPANAMIDE
2ZN2Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
12C61Ligand/Ion3-[(4-OXO-3,4-DIHYDROQUINAZOLIN-2-YL)SULFANYL]-N-[TRANS-4-(5-PHENYL-1,3,4-OXADIAZOL-2-YL)CYCLOHEXYL]PROPANAMIDE
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
12C61Ligand/Ion3-[(4-OXO-3,4-DIHYDROQUINAZOLIN-2-YL)SULFANYL]-N-[TRANS-4-(5-PHENYL-1,3,4-OXADIAZOL-2-YL)CYCLOHEXYL]PROPANAMIDE
2ZN-1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:1234 , HIS A:1237 , CYS A:1242 , CYS A:1245BINDING SITE FOR RESIDUE ZN A 1401
2AC2SOFTWAREHIS A:1184 , GLY A:1185 , SER A:1186 , PHE A:1188 , ALA A:1191 , ILE A:1192 , GLY A:1196 , PHE A:1197 , ASP A:1198 , HIS A:1201 , TYR A:1213 , PHE A:1214 , ALA A:1215 , LYS A:1220 , SER A:1221 , TYR A:1224 , GLU A:1291 , HOH A:1553BINDING SITE FOR RESIDUE 2C6 A 1402
3AC3SOFTWARECYS B:1234 , HIS B:1237 , CYS B:1242 , CYS B:1245BINDING SITE FOR RESIDUE ZN B 1401
4AC4SOFTWAREHIS B:1184 , GLY B:1185 , SER B:1186 , PHE B:1188 , ALA B:1191 , ILE B:1192 , LYS B:1195 , GLY B:1196 , PHE B:1197 , ASP B:1198 , HIS B:1201 , ILE B:1212 , TYR B:1213 , PHE B:1214 , ALA B:1215 , LYS B:1220 , SER B:1221 , TYR B:1224 , ILE B:1228 , GLU B:1291BINDING SITE FOR RESIDUE 2C6 B 1402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MSG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MSG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MSG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MSG)

(-) Exons   (0, 0)

(no "Exon" information available for 4MSG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhh................eeeeeeeeeeehhhhhhhhhhhhhhhhhh......eeeeee...hhhhhhhhh.hhhhh.........eee..hhhhhhh...hhhhh...............eeeeeeeee...eeee..............eeee..........eeee.hhh.eeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4msg A 1105 GTILLDLAPEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEH 1315
                                  1114      1124      1134      1144      1154      1164      1174      1184      1194      1204      1214      1224      1234      1244      1254      1264      1274      1284      1294      1304      1314 


Chain B from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                           
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhhh...............eeeeeeeeeeehhhhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhhh.hhhhh.........eeee.hhhhhhh...hhhhh...............eeeeeeeee...eee...............eeee..eeee.hhh.eeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4msg B 1105 GTILLDLAPEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGYAEYVIYRGEQAYPEYLITYQIMKPE 1314
                                  1114      1124      1134      1144      1154      1164      1174      1184      1194      1204      1214      1224      1234      1244      1254      1264      1274     |1292      1302      1312  
                                                                                                                                                                                                        1280|                         
                                                                                                                                                                                                         1289
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MSG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MSG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MSG)

(-) Gene Ontology  (46, 46)

Asymmetric Unit(hide GO term definitions)

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  4msg
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  TNKS1_HUMAN | O95271
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  2.4.2.30
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TNKS1_HUMAN | O95271: 2rf5 3udd 3uh2 3uh4 4dvi 4i9i 4k4e 4k4f 4krs 4li6 4li7 4li8 4msk 4mt9 4n3r 4n4v 4oa7 4tor 4tos 4u6a 4uuh 4uw1 4w5s 4w6e 5ebt 5ece 5ety 5gp7 5jhq 5jti 5ju5 5kni

(-) Related Entries Specified in the PDB File

4i9i 4msk