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(-) Description

Title :  TANKYRASE-1 COMPLEXED WITH SMALL MOLECULE INHIBITOR
 
Authors :  T. Stams, C. Kirby
Date :  17 May 13  (Deposition) - 28 Aug 13  (Release) - 25 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.29
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. D. Shultz, D. Majumdar, D. N. Chin, P. D. Fortin, Y. Feng, T. Gould, C. A. Kirby, T. Stams, N. J. Waters, W. Shao
Structure-Efficiency Relationship Of [1, 2, 4]Triazol-3-Ylamines As Novel Nicotinamide Isosteres That Inhibit Tankyrases.
J. Med. Chem. V. 56 7049 2013
PubMed-ID: 23879431  |  Reference-DOI: 10.1021/JM400826J

(-) Compounds

Molecule 1 - TANKYRASE-1
    Chains: A, B
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: CATALYTIC DOMAIN
    Gene: TNKS, PARP5A, PARPL, TIN1, TINF1, TNKS1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TANK1, ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 5, ARTD5, POLY [ADP-RIBOSE] POLYMERASE 5A, TNKS-1, TRF1-INTERACTING ANKYRIN-RELATED ADP-RIBOSE POLYMERASE, TANKYRASE I

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
11SX2Ligand/Ion4-TERT-BUTYL-N-(5,6-DIHYDRO[1,3]THIAZOLO[2,3-C][1,2,4]TRIAZOL-3-YL)BENZAMIDE
2SO45Ligand/IonSULFATE ION
3ZN2Ligand/IonZINC ION
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
11SX1Ligand/Ion4-TERT-BUTYL-N-(5,6-DIHYDRO[1,3]THIAZOLO[2,3-C][1,2,4]TRIAZOL-3-YL)BENZAMIDE
2SO44Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
11SX1Ligand/Ion4-TERT-BUTYL-N-(5,6-DIHYDRO[1,3]THIAZOLO[2,3-C][1,2,4]TRIAZOL-3-YL)BENZAMIDE
2SO41Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:1234 , HIS A:1237 , CYS A:1242 , CYS A:1245BINDING SITE FOR RESIDUE ZN A 1401
2AC2SOFTWAREHIS A:1132 , ARG A:1133 , LYS A:1220 , ALA A:1288 , HOH A:1540BINDING SITE FOR RESIDUE SO4 A 1402
3AC3SOFTWAREHIS A:1176 , HOH A:1534 , HIS B:1176 , HIS B:1177 , ASN B:1178BINDING SITE FOR RESIDUE SO4 A 1403
4AC4SOFTWAREASN A:1143 , ARG A:1144 , PRO A:1313 , GLU A:1314 , HOH A:1504BINDING SITE FOR RESIDUE SO4 A 1404
5AC5SOFTWAREARG A:1149 , HIS A:1246BINDING SITE FOR RESIDUE SO4 A 1405
6AC6SOFTWAREHIS A:1184 , GLY A:1185 , SER A:1186 , PHE A:1188 , TYR A:1203 , TYR A:1213 , SER A:1221 , TYR A:1224 , HOH A:1537BINDING SITE FOR RESIDUE 1SX A 1406
7AC7SOFTWARECYS B:1234 , HIS B:1237 , CYS B:1242 , CYS B:1245BINDING SITE FOR RESIDUE ZN B 1401
8AC8SOFTWAREARG B:1130 , HIS B:1132 , ARG B:1133 , LYS B:1220 , HOH B:1502BINDING SITE FOR RESIDUE SO4 B 1402
9AC9SOFTWAREHIS B:1184 , GLY B:1185 , PHE B:1188 , TYR B:1203 , TYR B:1213 , SER B:1221 , TYR B:1224 , ILE B:1228 , HOH B:1551BINDING SITE FOR RESIDUE 1SX B 1403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KRS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KRS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KRS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KRS)

(-) Exons   (0, 0)

(no "Exon" information available for 4KRS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:204
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhh.................eeeeeeeeeehhhhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhhh.hhhhh.........eeee.hhhhhhh...hhhhh...............eeeeeeeee...eeee..............eeee....eeee.hhh.eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4krs A 1105 GTILLDLAPEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSVIGRAYAEYVIYRGEQAYPEYLITYQIMKPE 1314
                                  1114      1124      1134      1144      1154      1164      1174      1184      1194      1204      1214      1224      1234      1244      1254      1264      1274      1290      1300      1310    
                                                                                                                                                                                                         1281|                          
                                                                                                                                                                                                          1288                          


Chain B from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhhh................eeeeeeeeeehhhhhhhhhhhhhhhhhh......eeeeee...hhhhhhhhh.hhhhh.........eee..hhhhhhh...hhhhh...............eeeeeeeee...eeee..............eeee........eeee.hhh.eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4krs B 1105 GTILLDLAPEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSVIGRPSVNAYAEYVIYRGEQAYPEYLITYQIMKPE 1314
                                  1114      1124      1134      1144      1154      1164      1174      1184      1194      1204      1214      1224      1234      1244      1254      1264      1274      1284||    1296      1306        
                                                                                                                                                                                                             1285|                          
                                                                                                                                                                                                              1288
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KRS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KRS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KRS)

(-) Gene Ontology  (46, 46)

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  4krs
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 Related Entries

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UniProtKB/Swiss-Prot
        TNKS1_HUMAN | O95271: 2rf5 3udd 3uh2 3uh4 4dvi 4i9i 4k4e 4k4f 4li6 4li7 4li8 4msg 4msk 4mt9 4n3r 4n4v 4oa7 4tor 4tos 4u6a 4uuh 4uw1 4w5s 4w6e 5ebt 5ece 5ety 5gp7 5jhq 5jti 5ju5 5kni

(-) Related Entries Specified in the PDB File

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