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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF FKBP52, COMPLEX WITH FK506
 
Authors :  A. Bracher, C. Kozany, A. Haehle, P. Wild, M. Zacharias, F. Hausch
Date :  20 Jun 13  (Deposition) - 21 Aug 13  (Release) - 13 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym./Biol. Unit :  A
Keywords :  Fk-506 Binding Domain, Hsp90 Cochaperone, Immunophilin, Peptidyl- Prolyl Isomerase, Protein Folding, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Bracher, C. Kozany, A. Hahle, P. Wild, M. Zacharias, F. Hausch
Crystal Structures Of The Free And Ligand-Bound Fk1-Fk2 Domain Segment Of Fkbp52 Reveal A Flexible Inter-Domain Hinge.
J. Mol. Biol. V. 425 4134 2013
PubMed-ID: 23933011  |  Reference-DOI: 10.1016/J.JMB.2013.07.041

(-) Compounds

Molecule 1 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP4
    Chains: A
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPROEX-HTB
    Expression System Strain: BL21(DE3) CODON+ RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 16-260
    Gene: FKBP4, FKBP52
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PPIASE FKBP4, 52 KDA FK506-BINDING PROTEIN, 52 KDA FKBP, FKBP-52, 59 KDA IMMUNOPHILIN, P59, FK506-BINDING PROTEIN 4, FKBP-4, FKBP59, HSP-BINDING IMMUNOPHILIN, HBI, IMMUNOPHILIN FKBP52, ROTAMASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1DMS3Ligand/IonDIMETHYL SULFOXIDE
2FK51Ligand/Ion8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN
3GOL1Ligand/IonGLYCEROL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:57 , PHE A:67 , ASP A:68 , PHE A:77 , GLU A:85 , VAL A:86 , ILE A:87 , TRP A:90 , ALA A:112 , TYR A:113 , LYS A:121 , PHE A:130 , DMS A:302BINDING SITE FOR RESIDUE FK5 A 301
2AC2SOFTWAREGLU A:110 , ALA A:112 , TYR A:113 , GLY A:114 , FK5 A:301BINDING SITE FOR RESIDUE DMS A 302
3AC3SOFTWARELEU A:182BINDING SITE FOR RESIDUE DMS A 303
4AC4SOFTWAREGLU A:166 , GLY A:193 , TYR A:202 , ARG A:206 , GLN A:209BINDING SITE FOR RESIDUE DMS A 304
5AC5SOFTWARETYR A:178 , LYS A:181 , GLN A:236 , HOH A:461BINDING SITE FOR RESIDUE GOL A 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LAX)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro A:119 -Pro A:120

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LAX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LAX)

(-) Exons   (0, 0)

(no "Exon" information available for 4LAX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:237
                                                                                                                                                                                                                                                                             
               SCOP domains d4laxa1 A:22-140 FKBP52, N-terminal domains                                                                            d4laxa2 A:141-258 FKBP52, N-terminal domains                                                                           SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee........eeeeeee............eeeeeeeeee....eeee.hhh...eeee......hhhhhhhhh......eeeeee.hhhh...............eeeeeeeeeee.ee........eeeeeee............eeeeeeeeee..eeeeeeeeeee..hhhhhh.hhhhhhhhh......eeeeee.hhhh.....hhhhh......eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lax A  22 GVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKES 258
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LAX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LAX)

(-) Gene Ontology  (43, 43)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Pro A:119 - Pro A:120   [ RasMol ]  
 

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  FKBP4_HUMAN | Q02790
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FKBP4_HUMAN | Q02790: 1n1a 1p5q 1q1c 1qz2 4drj 4lav 4law 4lay 4tw8

(-) Related Entries Specified in the PDB File

1q1c CRYSTAL STRUCTURE OF RESIDUES 1-260 OF FKBP52
4lav
4law
4lay