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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF FKBP52, CRYSTAL FORM II
 
Authors :  A. Bracher, C. Kozany, A. Haehle, P. Wild, M. Zacharias, F. Hausch
Date :  20 Jun 13  (Deposition) - 21 Aug 13  (Release) - 13 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Fk-506 Binding Domain, Hsp90 Cochaperone, Immunophilin, Peptidyl- Prolyl Isomerase, Protein Folding, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Bracher, C. Kozany, A. Hahle, P. Wild, M. Zacharias, F. Hausch
Crystal Structures Of The Free And Ligand-Bound Fk1-Fk2 Domain Segment Of Fkbp52 Reveal A Flexible Inter-Domain Hinge.
J. Mol. Biol. V. 425 4134 2013
PubMed-ID: 23933011  |  Reference-DOI: 10.1016/J.JMB.2013.07.041

(-) Compounds

Molecule 1 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP4
    Chains: A, B
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPROEX-HTB
    Expression System Strain: BL21(DE3) CODON+ RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 16-260
    Gene: FKBP4, FKBP52
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PPIASE FKBP4, 52 KDA FK506-BINDING PROTEIN, 52 KDA FKBP, FKBP-52, 59 KDA IMMUNOPHILIN, P59, FK506-BINDING PROTEIN 4, FKBP-4, FKBP59, HSP-BINDING IMMUNOPHILIN, HBI, IMMUNOPHILIN FKBP52, ROTAMASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:153 , GLN A:155 , HOH A:513BINDING SITE FOR RESIDUE SO4 A 301
2AC2SOFTWAREGLU A:136 , LYS A:138 , LYS A:163 , ARG A:210 , HOH A:452 , HOH A:553 , HOH A:598 , HOH A:640BINDING SITE FOR RESIDUE SO4 A 302
3AC3SOFTWAREARG B:153 , GLN B:155 , HOH B:529BINDING SITE FOR RESIDUE SO4 B 301
4AC4SOFTWARELYS B:138 , LYS B:163 , ARG B:210 , HOH B:450 , HOH B:566 , HOH B:616BINDING SITE FOR RESIDUE SO4 B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LAV)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Pro A:119 -Pro A:120
2Ser B:118 -Pro B:119

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LAV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LAV)

(-) Exons   (0, 0)

(no "Exon" information available for 4LAV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains d4lava1 A:16-140 FKBP52, N-terminal domains                                                                                  d4lava2 A:141-255 FKBP52, N-terminal domains                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .................eeeeeee............eeeeeeeeee....eeee.......eeee......hhhhhhhhh......eeeeee.hhhh...............eeeeeeeeeee...........eeeeeee............eeeeeeeeee..eeeeeeeeeee..hhhhhh.hhhhhhhhh......eeeeee.hhhh.....hhhhh......eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lav A  16 APLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKA 255
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255


Chain B from PDB  Type:PROTEIN  Length:238
                                                                                                                                                                                                                                                                              
               SCOP domains d4lavb1 B:16-140 FKBP52, N-terminal domains                                                                                d4lavb2 B:141-255 FKBP52, N-terminal domains                                                                        SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeeee............eeeeeeeeee....eeee.......eeee......hhhhhhhhh......eeeeee.hhhh.............eeeeeeeeeee...........eeeeeee............eeeeeeeeee..eeeeeeeeeee..hhhhhh.hhhhhhhhh......eeeeee.hhhh.....hhhhh......eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lav B  16 APLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKA 255
                                    25        35        45        55        65        75        85        95       105       115   ||  127       137       147       157       167       177       187       197       207       217       227       237       247        
                                                                                                                                 119|                                                                                                                                     
                                                                                                                                  122
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LAV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LAV)

(-) Gene Ontology  (43, 43)

Asymmetric Unit(hide GO term definitions)

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  FKBP4_HUMAN | Q02790
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FKBP4_HUMAN | Q02790: 1n1a 1p5q 1q1c 1qz2 4drj 4law 4lax 4lay 4tw8

(-) Related Entries Specified in the PDB File

1q1c CRYSTAL STRUCTURE OF RESIDUES 1-260 OF FKBP52
4law
4lax
4lay