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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF FKBP52, CRYSTAL FORM III
 
Authors :  A. Bracher, C. Kozany, A. Haehle, P. Wild, M. Zacharias, F. Hausch
Date :  20 Jun 13  (Deposition) - 21 Aug 13  (Release) - 13 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Fk-506 Binding Domain, Hsp90 Cochaperone, Immunophilin, Peptidyl- Prolyl Isomerase, Protein Folding, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Bracher, C. Kozany, A. Hahle, P. Wild, M. Zacharias, F. Hausch
Crystal Structures Of The Free And Ligand-Bound Fk1-Fk2 Domain Segment Of Fkbp52 Reveal A Flexible Inter-Domain Hinge.
J. Mol. Biol. V. 425 4134 2013
PubMed-ID: 23933011  |  Reference-DOI: 10.1016/J.JMB.2013.07.041

(-) Compounds

Molecule 1 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP4
    Chains: A, B
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPROEX-HTB
    Expression System Strain: BL21(DE3) CODON+ RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 16-260
    Gene: FKBP4, FKBP52
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PPIASE FKBP4, 52 KDA FK506-BINDING PROTEIN, 52 KDA FKBP, FKBP-52, 59 KDA IMMUNOPHILIN, P59, FK506-BINDING PROTEIN 4, FKBP-4, FKBP59, HSP-BINDING IMMUNOPHILIN, HBI, IMMUNOPHILIN FKBP52, ROTAMASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 9)

Asymmetric Unit (1, 9)
No.NameCountTypeFull Name
1DMS9Ligand/IonDIMETHYL SULFOXIDE
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1DMS5Ligand/IonDIMETHYL SULFOXIDE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1DMS4Ligand/IonDIMETHYL SULFOXIDE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:110 , SER A:115BINDING SITE FOR RESIDUE DMS A 301
2AC2SOFTWAREARG A:157 , GLY A:158 , TYR A:161 , GLU A:212BINDING SITE FOR RESIDUE DMS A 302
3AC3SOFTWAREGLU A:166 , TYR A:202 , GLU A:205 , ARG A:206 , GLN A:209BINDING SITE FOR RESIDUE DMS A 303
4AC4SOFTWAREVAL A:86 , ILE A:87 , TYR A:113 , PHE A:130BINDING SITE FOR RESIDUE DMS A 304
5AC5SOFTWAREVAL A:99 , PHE A:137BINDING SITE FOR RESIDUE DMS A 305
6AC6SOFTWAREPHE B:54 , GLU B:136 , TYR B:220BINDING SITE FOR RESIDUE DMS B 301
7AC7SOFTWAREPHE B:77 , VAL B:86 , ILE B:87 , TYR B:113BINDING SITE FOR RESIDUE DMS B 302
8AC8SOFTWAREGLU B:166 , GLY B:193 , TYR B:202 , GLU B:205 , ARG B:206 , GLN B:209BINDING SITE FOR RESIDUE DMS B 303
9AC9SOFTWAREARG A:189 , GLU A:191 , PRO B:124 , HOH B:409BINDING SITE FOR RESIDUE DMS B 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LAW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LAW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LAW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LAW)

(-) Exons   (0, 0)

(no "Exon" information available for 4LAW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:235
                                                                                                                                                                                                                                                                           
               SCOP domains d4lawa1 A:21-140 FKBP52, N-terminal domains                                                                             d4lawa2 A:141-255 FKBP52, N-terminal domains                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee........eeeeeee............eeeeeeeee.....eeee.......eeee......hhhhhhhhh......eeeeee.hhhh...............eeeeeeeeeee.ee........eeeeeee............eeeeeeeeee..eeeeeeeeeee..hhhhh..hhhhhhhhh......eeeeee.hhhh.....hhhhh......eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4law A  21 EGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKA 255
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250     


Chain B from PDB  Type:PROTEIN  Length:234
                                                                                                                                                                                                                                                                          
               SCOP domains d4lawb1 B:22-140 FKBP52, N-terminal domains                                                                            d4lawb2 B:141-255 FKBP52, N-terminal domains                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee........eeeeeee............eeeeeeeeee....eeee.......eeee......hhhhhhhhhhh....eeeeee.hhhh...............eeeeeee.....ee........eeeeeee............eeeeeeeeee..eeeeeeeeeee..hhhhhh.hhhhhhhhh......eeeeee.hhhh.....hhhhh......eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4law B  22 GVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKA 255
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LAW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LAW)

(-) Gene Ontology  (43, 43)

Asymmetric Unit(hide GO term definitions)

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  FKBP4_HUMAN | Q02790
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FKBP4_HUMAN | Q02790: 1n1a 1p5q 1q1c 1qz2 4drj 4lav 4lax 4lay 4tw8

(-) Related Entries Specified in the PDB File

1q1c CRYSTAL STRUCTURE OF RESIDUES 1-260 OF FKBP52
4lav
4lax
4lay