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(-) Description

Title :  THE FK1-FK2 DOMAINS OF FKBP52 IN COMPLEX WITH IFIT-FL
 
Authors :  S. Gaali, A. Kirschner, S. Cuboni, J. Hartmann, C. Kozany, G. Balsevich C. Namendorf, P. Fernandez-Vizarra, O. F. X. Almeida, G. Ruehter, M. U M. V. Schmidt, C. Touma, A. Bracher, F. Hausch
Date :  30 Jun 14  (Deposition) - 26 Nov 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Fk-506 Binding Domain, Hsp90 Cochaperone, Immunophiline, Peptidyl- Prolyl Isomerase, Ligand Selectivity, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Gaali, A. Kirschner, S. Cuboni, J. Hartmann, C. Kozany, G. Balsevich, C. Namendorf, P. Fernandez-Vizarra, C. Sippel, A. S. Zannas, R. Draenert, E. B. Binder, O. F. Almeida, G. Ruhter, M. Uhr M. V. Schmidt, C. Touma, A. Bracher, F. Hausch
Selective Inhibitors Of The Fk506-Binding Protein 51 By Induced Fit.
Nat. Chem. Biol. V. 11 33 2015
PubMed-ID: 25436518  |  Reference-DOI: 10.1038/NCHEMBIO.1699
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP4
    Chains: A, B
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28
    Expression System Strain: CODON PLUS RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 21-255
    Gene: FKBP4, FKBP52
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PPIASE FKBP4,51 KDA FK506-BINDING PROTEIN,FKBP51,52 KDA FK506-BINDING PROTEIN,FKBP-52,59 KDA IMMUNOPHILIN,P59,FK506-BINDING PROTEIN 4,FKBP-4,FKBP59,HSP-BINDING IMMUNOPHILIN,HBI,IMMUNOPHILIN FKBP52,ROTAMASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
137M2Ligand/Ion2-(5-{[({3-[(1R)-1-[({(2S)-1-[(2S)-2-[(1S)-CYCLOHEX-2-EN-1-YL]-2-(3,4,5-TRIMETHOXYPHENYL)ACETYL]PIPERIDIN-2-YL}CARBONYL)OXY]-3-(3,4-DIMETHOXYPHENYL)PROPYL]PHENOXY}ACETYL)AMINO]METHYL}-6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)BENZOIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
137M1Ligand/Ion2-(5-{[({3-[(1R)-1-[({(2S)-1-[(2S)-2-[(1S)-CYCLOHEX-2-EN-1-YL]-2-(3,4,5-TRIMETHOXYPHENYL)ACETYL]PIPERIDIN-2-YL}CARBONYL)OXY]-3-(3,4-DIMETHOXYPHENYL)PROPYL]PHENOXY}ACETYL)AMINO]METHYL}-6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)BENZOIC ACID
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
137M1Ligand/Ion2-(5-{[({3-[(1R)-1-[({(2S)-1-[(2S)-2-[(1S)-CYCLOHEX-2-EN-1-YL]-2-(3,4,5-TRIMETHOXYPHENYL)ACETYL]PIPERIDIN-2-YL}CARBONYL)OXY]-3-(3,4-DIMETHOXYPHENYL)PROPYL]PHENOXY}ACETYL)AMINO]METHYL}-6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)BENZOIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:57 , GLY A:59 , ASP A:68 , GLY A:84 , GLU A:85 , VAL A:86 , ILE A:87 , TRP A:90 , TYR A:113 , LYS A:121 , ARG A:189binding site for residue 37M A 301
2AC2SOFTWARETYR B:57 , GLY B:59 , ASP B:68 , GLY B:84 , GLU B:85 , VAL B:86 , ILE B:87 , TRP B:90 , TYR B:113binding site for residue 37M B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TW8)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Pro A:119 -Pro A:120
2Pro B:119 -Pro B:120

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TW8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TW8)

(-) Exons   (0, 0)

(no "Exon" information available for 4TW8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:235
                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee........eeeeeee............eeeeeeeeee.....eee.......eeee......hhhhhhhhh......eeeeee.hhhh...............eeeeeeeeeee.ee........eeeeeee............eeeeeeeee....eeeeeeeeee..hhhhhh.hhhhhhhhh......eeeeee.hhhh.....hhhhh......eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tw8 A  21 EGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKA 255
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250     


Chain B from PDB  Type:PROTEIN  Length:235
                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee........eeeeeee............eeeeeeeeee.....eee.......eeee......hhhhhhhhh......eeeeee.hhhh...............eeeeeeeeeee.ee........eeeeeee............eeeeeeeeee..eeeeeeeeeee...hhhhh.hhhhhhhhh......eeeeee.hhhh.....hhhhh......eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tw8 B  21 EGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKA 255
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TW8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TW8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TW8)

(-) Gene Ontology  (43, 43)

Asymmetric Unit(hide GO term definitions)

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  FKBP4_HUMAN | Q02790
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FKBP4_HUMAN | Q02790: 1n1a 1p5q 1q1c 1qz2 4drj 4lav 4law 4lax 4lay

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4TW8)