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(-) Description

Title :  CRYSTAL STRUCTURE OF A BACTERIAL IMMUNOGLOBULIN-LIKE DOMAIN FROM THE M. PRIMORYENSIS ICE-BINDING ADHESIN
 
Authors :  S. Guo, C. P. Garnham, S. P. Karunan, R. L. Campbell, J. S. Allingham, P. L
Date :  25 Apr 13  (Deposition) - 02 Oct 13  (Release) - 07 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym./Biol. Unit :  A
Keywords :  Bacterial Ig-Like Domain, Extender Domain, Ca2+-Dependent, Immunoglobulin-Like Beta-Sandwich, Extender, Outer Membrane (Cell Surface), Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Guo, C. P. Garnham, S. Karunan Partha, R. L. Campbell, J. S. Allingham, P. L. Davies
Role Of Ca(2+) In Folding The Tandem Beta-Sandwich Extender Domains Of A Bacterial Ice-Binding Adhesin.
Febs J. V. 280 5919 2013
PubMed-ID: 24024640  |  Reference-DOI: 10.1111/FEBS.12518

(-) Compounds

Molecule 1 - ANTIFREEZE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 28A
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: SINGLE DOMAIN OF MPAFP_RII
    Gene: MPAFP
    Organism Scientific: MARINOMONAS PRIMORYENSIS
    Organism Taxid: 178399
    Strain: ANTARCTIC

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1CA7Ligand/IonCALCIUM ION
2GOL1Ligand/IonGLYCEROL

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:14 , ASP A:16 , VAL A:18 , GLU A:23 , HOH A:323 , HOH A:400BINDING SITE FOR RESIDUE CA A 201
2AC2SOFTWAREASP A:76 , ALA A:78 , HOH A:324 , HOH A:327 , HOH A:349 , HOH A:431BINDING SITE FOR RESIDUE CA A 202
3AC3SOFTWAREASP A:17 , THR A:100 , HOH A:302 , HOH A:317 , HOH A:335 , HOH A:339BINDING SITE FOR RESIDUE CA A 203
4AC4SOFTWAREASP A:38 , GLU A:52 , ASP A:104 , HOH A:432 , HOH A:433BINDING SITE FOR RESIDUE CA A 204
5AC5SOFTWAREGLU A:52 , ASP A:104 , HOH A:310 , HOH A:318 , HOH A:347 , HOH A:439BINDING SITE FOR RESIDUE CA A 205
6AC6SOFTWAREGLY A:51 , HOH A:301 , HOH A:307 , HOH A:341BINDING SITE FOR RESIDUE CA A 206
7AC7SOFTWARESER A:86 , HOH A:315 , HOH A:383 , HOH A:402 , HOH A:434BINDING SITE FOR RESIDUE CA A 207
8AC8SOFTWAREASP A:43 , THR A:44 , THR A:84 , HOH A:335 , HOH A:363BINDING SITE FOR RESIDUE GOL A 208

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KDW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KDW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KDW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KDW)

(-) Exons   (0, 0)

(no "Exon" information available for 4KDW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeee.......eehhhhhh.eeeeeeeee........eeeeee..eeeeee.....eeeeeeehhhhhhh.eeeeeeeee.....eeeeeeeee.ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4kdw A   3 ATAGTVTVNAITSDDVINASEAAGTVAVSGTATGGDIAEGDTVTLEINGETYTTTVDANGEWSVDVAGSDLAADTAFDAVVTSSDAAGNTVDTTGSSTHTVD 104
                                    12        22        32        42        52        62        72        82        92       102
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KDW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KDW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KDW)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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  4kdw
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A1YIY3_9GAMM | A1YIY3: 5j6y
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        A1YIY3_9GAMM | A1YIY3: 3p4g 4kdv

(-) Related Entries Specified in the PDB File

3p4g X-RAY CRYSTAL STRUCTURE OF A HYPERACTIVE, CA2+-DEPENDENT, BETA-HELICAL ANTIFREEZE PROTEIN FROM AN ANTARCTIC BACTERIUM
4kdv