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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF A HYPERACTIVE, CA2+-DEPENDENT, BETA-HELICAL ANTIFREEZE PROTEIN FROM AN ANTARCTIC BACTERIUM
 
Authors :  C. P. Garnham, R. L. Campbell, P. L. Davies
Date :  06 Oct 10  (Deposition) - 27 Apr 11  (Release) - 18 May 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Right-Handed Ca2+-Binding Beta-Helix, Antifreeze Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. P. Garnham, R. L. Campbell, P. L. Davies
Anchored Clathrate Waters Bind Antifreeze Proteins To Ice.
Proc. Natl. Acad. Sci. Usa V. 108 7363 2011
PubMed-ID: 21482800  |  Reference-DOI: 10.1073/PNAS.1100429108

(-) Compounds

Molecule 1 - ANTIFREEZE PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3) STAR
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 997-1318
    Gene: MPAFP
    Organism Scientific: MARINOMONAS PRIMORYENSIS
    Organism Taxid: 178399

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 58)

Asymmetric Unit (3, 58)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CA52Ligand/IonCALCIUM ION
3MG4Ligand/IonMAGNESIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (58, 58)

Asymmetric Unit (58, 58)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:34 , SER A:36 , ASN A:38 , VAL A:52 , ALA A:54 , ASP A:57BINDING SITE FOR RESIDUE CA A 401
02AC2SOFTWARELEU A:53 , GLY A:55 , ASP A:57 , MET A:79 , THR A:81 , ASP A:84BINDING SITE FOR RESIDUE CA A 402
03AC3SOFTWAREGLY A:80 , GLY A:82 , ASP A:84 , ALA A:98 , THR A:100 , ASP A:103BINDING SITE FOR RESIDUE CA A 403
04AC4SOFTWAREGLY A:99 , GLY A:101 , ASP A:103 , ALA A:117 , THR A:119 , ASP A:122BINDING SITE FOR RESIDUE CA A 404
05AC5SOFTWAREGLY A:118 , GLY A:120 , ASP A:122 , ALA A:136 , THR A:138 , ASP A:141BINDING SITE FOR RESIDUE CA A 405
06AC6SOFTWAREGLY A:137 , THR A:138 , ASP A:139 , ASP A:141 , ALA A:155 , THR A:157 , ASP A:160BINDING SITE FOR RESIDUE CA A 406
07AC7SOFTWAREGLY A:156 , GLY A:158 , ASP A:160 , MET A:174 , THR A:176 , ASP A:179BINDING SITE FOR RESIDUE CA A 407
08AC8SOFTWAREGLY A:175 , ASP A:177 , ASP A:179 , LEU A:195 , THR A:197 , ASP A:200BINDING SITE FOR RESIDUE CA A 408
09AC9SOFTWAREASP A:196 , GLY A:198 , ASP A:200 , GLY A:214 , THR A:216 , ASP A:219BINDING SITE FOR RESIDUE CA A 409
10BC1SOFTWAREGLY A:215 , GLY A:217 , ASP A:219 , GLY A:233 , THR A:235 , ASP A:238BINDING SITE FOR RESIDUE CA A 410
11BC2SOFTWAREGLY A:234 , GLY A:236 , ASP A:238 , LEU A:254 , THR A:256 , ASP A:259BINDING SITE FOR RESIDUE CA A 411
12BC3SOFTWAREGLY A:255 , GLY A:257 , ASP A:259 , GLY A:273 , GLU A:275 , ASP A:278BINDING SITE FOR RESIDUE CA A 412
13BC4SOFTWAREASN A:274 , GLY A:276 , ASP A:278 , GLU A:304 , HOH A:1462 , HOH A:1615BINDING SITE FOR RESIDUE CA A 413
14BC5SOFTWAREASP A:139 , HOH A:1657 , HOH A:1661 , GLU C:104 , HOH C:1655 , HOH C:1658BINDING SITE FOR RESIDUE MG A 324
15BC6SOFTWAREASP A:148 , HOH A:1668 , HOH A:1669 , HOH A:1670 , HOH A:1671 , HOH A:1672BINDING SITE FOR RESIDUE MG A 325
16BC7SOFTWAREASP A:167 , HOH A:1551 , HOH A:1572 , HOH A:1673 , HOH A:1674BINDING SITE FOR RESIDUE MG A 326
17BC8SOFTWAREASP B:34 , SER B:36 , ASN B:38 , VAL B:52 , ALA B:54 , ASP B:57BINDING SITE FOR RESIDUE CA B 401
18BC9SOFTWARELEU B:53 , GLY B:55 , ASP B:57 , MET B:79 , THR B:81 , ASP B:84BINDING SITE FOR RESIDUE CA B 402
19CC1SOFTWAREGLY B:80 , GLY B:82 , ASP B:84 , ALA B:98 , THR B:100 , ASP B:103BINDING SITE FOR RESIDUE CA B 403
20CC2SOFTWAREGLY B:99 , GLY B:101 , ASP B:103 , ALA B:117 , THR B:119 , ASP B:122BINDING SITE FOR RESIDUE CA B 404
21CC3SOFTWAREGLY B:118 , GLY B:120 , ASP B:122 , ALA B:136 , THR B:138 , ASP B:141BINDING SITE FOR RESIDUE CA B 405
22CC4SOFTWAREGLY B:137 , ASP B:139 , ASP B:141 , ALA B:155 , THR B:157 , ASP B:160BINDING SITE FOR RESIDUE CA B 406
23CC5SOFTWAREGLY B:156 , GLY B:158 , ASP B:160 , MET B:174 , THR B:176 , ASP B:179BINDING SITE FOR RESIDUE CA B 407
24CC6SOFTWAREGLY B:175 , ASP B:177 , ASP B:179 , LEU B:195 , THR B:197 , ASP B:200BINDING SITE FOR RESIDUE CA B 408
25CC7SOFTWAREASP B:196 , GLY B:198 , ASP B:200 , GLY B:214 , THR B:216 , ASP B:219BINDING SITE FOR RESIDUE CA B 409
26CC8SOFTWAREGLY B:215 , GLY B:217 , ASP B:219 , GLY B:233 , THR B:235 , ASP B:238BINDING SITE FOR RESIDUE CA B 410
27CC9SOFTWAREGLY B:234 , GLY B:236 , ASP B:238 , LEU B:254 , THR B:256 , ASP B:259BINDING SITE FOR RESIDUE CA B 411
28DC1SOFTWAREGLY B:255 , GLY B:257 , ASP B:259 , GLY B:273 , GLU B:275 , ASP B:278BINDING SITE FOR RESIDUE CA B 412
29DC2SOFTWAREASN B:274 , GLY B:276 , ASP B:278 , GLU B:304 , HOH B:390 , HOH B:1618BINDING SITE FOR RESIDUE CA B 413
30DC3SOFTWAREASP B:148 , HOH B:1663 , HOH B:1664 , HOH B:1665 , HOH B:1666 , HOH B:1667BINDING SITE FOR RESIDUE MG B 324
31DC4SOFTWAREILE A:239 , VAL A:260 , HOH A:1601 , ALA B:54 , GLY B:55 , THR B:81 , GLY B:82BINDING SITE FOR RESIDUE ACT B 325
32DC5SOFTWAREASP C:34 , SER C:36 , ASN C:38 , VAL C:52 , ALA C:54 , ASP C:57BINDING SITE FOR RESIDUE CA C 401
33DC6SOFTWARELEU C:53 , GLY C:55 , ASP C:57 , MET C:79 , THR C:81 , ASP C:84BINDING SITE FOR RESIDUE CA C 402
34DC7SOFTWAREGLY C:80 , GLY C:82 , ASP C:84 , ALA C:98 , THR C:100 , ASP C:103BINDING SITE FOR RESIDUE CA C 403
35DC8SOFTWAREGLY C:99 , GLY C:101 , ASP C:103 , ALA C:117 , THR C:119 , ASP C:122BINDING SITE FOR RESIDUE CA C 404
36DC9SOFTWAREGLY C:118 , GLY C:120 , ASP C:122 , ALA C:136 , GLY C:137 , THR C:138 , ASP C:141BINDING SITE FOR RESIDUE CA C 405
37EC1SOFTWAREGLY C:137 , ASP C:139 , ASP C:141 , ALA C:155 , THR C:157 , ASP C:160BINDING SITE FOR RESIDUE CA C 406
38EC2SOFTWAREGLY C:156 , GLY C:158 , ASP C:160 , MET C:174 , THR C:176 , ASP C:179BINDING SITE FOR RESIDUE CA C 407
39EC3SOFTWAREGLY C:175 , ASP C:177 , ASP C:179 , LEU C:195 , THR C:197 , ASP C:200BINDING SITE FOR RESIDUE CA C 408
40EC4SOFTWAREASP C:196 , GLY C:198 , ASP C:200 , GLY C:214 , THR C:216 , ASP C:219BINDING SITE FOR RESIDUE CA C 409
41EC5SOFTWAREGLY C:215 , GLY C:217 , ASP C:219 , GLY C:233 , THR C:235 , ASP C:238BINDING SITE FOR RESIDUE CA C 410
42EC6SOFTWAREGLY C:234 , GLY C:236 , ASP C:238 , LEU C:254 , THR C:256 , ASP C:259BINDING SITE FOR RESIDUE CA C 411
43EC7SOFTWAREGLY C:255 , GLY C:257 , ASP C:259 , GLY C:273 , GLU C:275 , ASP C:278BINDING SITE FOR RESIDUE CA C 412
44EC8SOFTWAREASN C:274 , GLY C:276 , ASP C:278 , GLU C:304 , HOH C:390 , HOH C:431BINDING SITE FOR RESIDUE CA C 413
45EC9SOFTWARETHR C:235 , GLY C:236 , THR C:256 , GLY C:257 , HOH C:1519 , SER D:36 , ASN D:37BINDING SITE FOR RESIDUE ACT C 324
46FC1SOFTWAREASP D:34 , SER D:36 , ASN D:38 , VAL D:52 , ALA D:54 , ASP D:57BINDING SITE FOR RESIDUE CA D 401
47FC2SOFTWARELEU D:53 , GLY D:55 , ASP D:57 , MET D:79 , THR D:81 , ASP D:84BINDING SITE FOR RESIDUE CA D 402
48FC3SOFTWAREGLY D:80 , GLY D:82 , ASP D:84 , ALA D:98 , THR D:100 , ASP D:103BINDING SITE FOR RESIDUE CA D 403
49FC4SOFTWAREGLY D:99 , GLY D:101 , ASP D:103 , ALA D:117 , THR D:119 , ASP D:122BINDING SITE FOR RESIDUE CA D 404
50FC5SOFTWAREGLY D:118 , GLY D:120 , ASP D:122 , ALA D:136 , THR D:138 , ASP D:141BINDING SITE FOR RESIDUE CA D 405
51FC6SOFTWAREGLY D:137 , THR D:138 , ASP D:139 , ASP D:141 , ALA D:155 , THR D:157 , ASP D:160BINDING SITE FOR RESIDUE CA D 406
52FC7SOFTWAREGLY D:156 , GLY D:158 , ASP D:160 , MET D:174 , THR D:176 , ASP D:179BINDING SITE FOR RESIDUE CA D 407
53FC8SOFTWAREGLY D:175 , ASP D:177 , ASP D:179 , LEU D:195 , THR D:197 , ASP D:200BINDING SITE FOR RESIDUE CA D 408
54FC9SOFTWAREASP D:196 , GLY D:198 , ASP D:200 , GLY D:214 , THR D:216 , ASP D:219BINDING SITE FOR RESIDUE CA D 409
55GC1SOFTWAREGLY D:215 , GLY D:217 , ASP D:219 , GLY D:233 , THR D:235 , ASP D:238BINDING SITE FOR RESIDUE CA D 410
56GC2SOFTWAREGLY D:234 , GLY D:236 , ASP D:238 , LEU D:254 , THR D:256 , ASP D:259BINDING SITE FOR RESIDUE CA D 411
57GC3SOFTWAREGLY D:255 , GLY D:257 , ASP D:259 , GLY D:273 , GLU D:275 , ASP D:278BINDING SITE FOR RESIDUE CA D 412
58GC4SOFTWAREASN D:274 , GLY D:276 , ASP D:278 , GLU D:304 , HOH D:702 , HOH D:1625BINDING SITE FOR RESIDUE CA D 413

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3P4G)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3P4G)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3P4G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3P4G)

(-) Exons   (0, 0)

(no "Exon" information available for 3P4G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:301
 aligned with A1YIY3_9GAMM | A1YIY3 from UniProtKB/TrEMBL  Length:1567

    Alignment length:301
                                  1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      1257      1267      1277      1287      1297      1307      1317 
        A1YIY3_9GAMM   1018 HSFDHYIGSAFDASNNNVAVTGNVSATLNVLAGDDKVSIDGNVEDVLVAANVAVLDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDAGTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLDTGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGTGNDIVRVQSQVWAEANISLGTGDDVLIVEHELHGTVAGNEGDDSIYLKFYTKEQYNNNSDLRNRVANFEHIRVSDGVVKGSPADFADY 1318
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.............eeee.......ee......eeee...............ee......eeee.......ee......eeee.......ee......eeee.......ee......eeee.......ee......eeee......eee......eeee........eee......eeee......eee......eeee......eee......eeee........eee......eeee......eee......eeee...hhhhhh.hhhhhhhhh...eeee..eeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3p4g A   23 HSFDHYIGSAFDASNNNVAVTGNVSATLNVLAGDDKVSIDGNVEDVLVAANVAVLDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDAGTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLDTGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGTGNDIVRVQSQVWAEANISLGTGDDVLIVEHELHGTVAGNEGDDSIYLKFYTKEQYNNNSDLRNRVANFEHIRVSDGVVKGSPADFADY  323
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322 


Chain B from PDB  Type:PROTEIN  Length:313
 aligned with A1YIY3_9GAMM | A1YIY3 from UniProtKB/TrEMBL  Length:1567

    Alignment length:313
                                  1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232      1242      1252      1262      1272      1282      1292      1302      1312   
        A1YIY3_9GAMM   1003 SFGFWDGTSTQAEITHSFDHYIGSAFDASNNNVAVTGNVSATLNVLAGDDKVSIDGNVEDVLVAANVAVLDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDAGTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLDTGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGTGNDIVRVQSQVWAEANISLGTGDDVLIVEHELHGTVAGNEGDDSIYLKFYTKEQYNNNSDLRNRVANFEHIRVSDGVVKGSPADF 1315
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eee.............eeee.......ee......eeee...............ee......eeee.......ee......eeee.......ee......eeee.......ee......eeee.......ee......eeee......eee......eeee........eee......eeee......eee......eeee......eee......eeee........eee......eeee......eee......eeee...hhhhhh.hhhhhhhhh...eeee..eeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3p4g B    8 SFGFWDGTSTQAEITHSFDHYIGSAFDASNNNVAVTGNVSATLNVLAGDDKVSIDGNVEDVLVAANVAVLDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDAGTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLDTGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGTGNDIVRVQSQVWAEANISLGTGDDVLIVEHELHGTVAGNEGDDSIYLKFYTKEQYNNNSDLRNRVANFEHIRVSDGVVKGSPADF  320
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317   


Chain C from PDB  Type:PROTEIN  Length:301
 aligned with A1YIY3_9GAMM | A1YIY3 from UniProtKB/TrEMBL  Length:1567

    Alignment length:301
                                  1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205      1215      1225      1235      1245      1255      1265      1275      1285      1295      1305      1315 
        A1YIY3_9GAMM   1016 ITHSFDHYIGSAFDASNNNVAVTGNVSATLNVLAGDDKVSIDGNVEDVLVAANVAVLDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDAGTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLDTGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGTGNDIVRVQSQVWAEANISLGTGDDVLIVEHELHGTVAGNEGDDSIYLKFYTKEQYNNNSDLRNRVANFEHIRVSDGVVKGSPADFA 1316
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.............eeee.......ee......eeee...............ee......eeee.......ee......eeee.......ee......eeee.......ee......eeee.......ee......eeee......eee......eeee........eee......eeee......eee......eeee......eee......eeee........eee......eeee......eee......eeee...hhhhhhhhhhhhhhhh...eeee..eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3p4g C   21 ITHSFDHYIGSAFDASNNNVAVTGNVSATLNVLAGDDKVSIDGNVEDVLVAANVAVLDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDAGTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLDTGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGTGNDIVRVQSQVWAEANISLGTGDDVLIVEHELHGTVAGNEGDDSIYLKFYTKEQYNNNSDLRNRVANFEHIRVSDGVVKGSPADFA  321
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 


Chain D from PDB  Type:PROTEIN  Length:312
 aligned with A1YIY3_9GAMM | A1YIY3 from UniProtKB/TrEMBL  Length:1567

    Alignment length:312
                                  1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153      1163      1173      1183      1193      1203      1213      1223      1233      1243      1253      1263      1273      1283      1293      1303      1313  
        A1YIY3_9GAMM   1004 FGFWDGTSTQAEITHSFDHYIGSAFDASNNNVAVTGNVSATLNVLAGDDKVSIDGNVEDVLVAANVAVLDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDAGTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLDTGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGTGNDIVRVQSQVWAEANISLGTGDDVLIVEHELHGTVAGNEGDDSIYLKFYTKEQYNNNSDLRNRVANFEHIRVSDGVVKGSPADF 1315
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............eee.............eeee.......ee......eeee...............ee......eeee.......ee......eeee.......ee......eeee.......ee......eeee.......ee......eeee......eee......eeee........eee......eeee......eee......eeee......eee......eeee........eee......eeee......eee......eeee...hhhhhhhhhhhhhhhh...eeee..eeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3p4g D    9 FGFWDGTSTQAEITHSFDHYIGSAFDASNNNVAVTGNVSATLNVLAGDDKVSIDGNVEDVLVAANVAVLDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDAGTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLDTGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGTGNDIVRVQSQVWAEANISLGTGDDVLIVEHELHGTVAGNEGDDSIYLKFYTKEQYNNNSDLRNRVANFEHIRVSDGVVKGSPADF  320
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3P4G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3P4G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3P4G)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (A1YIY3_9GAMM | A1YIY3)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

 Visualization

(-) Interactive Views

Asymmetric Unit
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  3p4g
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A1YIY3_9GAMM | A1YIY3: 5j6y
UniProtKB/TrEMBL
        A1YIY3_9GAMM | A1YIY3: 4kdv 4kdw

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3P4G)