4KDV - JenaLib

Title :   CRYSTAL STRUCTURE OF A BACTERIAL IMMUNOGLOBULIN-LIKE DOMAIN FROM THE M. PRIMORYENSIS ICE-BINDING ADHESIN

Authors :   S. Guo, C. P. Garnham, S. P. Karunan, R. L. Campbell, J. S. Allingham, P. L

Date :   25 Apr 13 (Deposition) - 02 Oct 13 (Release) - 07 May 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.42

Chains :   Asym./Biol. Unit : A

Keywords :   Bacterial Immunoglobulin-Like Beta-Sandwich, Extender Domain, Ca2+ - Dependent, Outer Membrane (Cell Surface), Adhesion Protein. , Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Guo, C. P. Garnham, S. Karunan Partha, R. L. Campbell, J. S. Allingham, P. L. Davies
Role Of Ca(2+) In Folding The Tandem Beta-Sandwich Extender Domains Of A Bacterial Ice-Binding Adhesin.
Febs J. V. 280 5919 2013
PubMed-ID: 24024640 | Reference-DOI: 10.1111/FEBS.12518

Compounds

Molecule 1 - ANTIFREEZE PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET 28A
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	SINGLE DOMAIN OF MPAFP_RII
	Gene	:	MPAFP
	Organism Scientific	:	MARINOMONAS PRIMORYENSIS
	Organism Taxid	:	178399
	Strain	:	ANTARCTIC

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 5)

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:14 , ASP A:16 , VAL A:18 , GLU A:23 , HOH A:333	BINDING SITE FOR RESIDUE CA A 201
2	AC2	SOFTWARE	ASP A:17 , THR A:100 , HOH A:306 , HOH A:327 , HOH A:331 , HOH A:332	BINDING SITE FOR RESIDUE CA A 202
3	AC3	SOFTWARE	ASP A:38 , GLU A:52 , ASP A:104 , HOH A:312 , HOH A:316	BINDING SITE FOR RESIDUE CA A 203
4	AC4	SOFTWARE	ASP A:76 , ALA A:78 , HOH A:350	BINDING SITE FOR RESIDUE CA A 204
5	AC5	SOFTWARE	GLU A:52 , ASP A:104	BINDING SITE FOR RESIDUE CA A 205

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeee.......eehhhhhh.eeeeeeeee........eeeeee..eeeeee.....eeeeeeehhhhhhh.eeeeeeeee.....eeeeeeeee.ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4kdv A   3 ATAGTVTVNAITSDDVINASEAAGTVAVSGTATGGDIAEGDTVTLEINGETYTTTVDANGEWSVDVAGSDLAADTAFDAVVTSSDAAGNTVDTTGSSTHTVD 104
                                    12        22        32        42        52        62        72        82        92       102

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Classification and Annotation

SCOP Domains (0, 0)

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Pfam Domains (0, 0)

Gene Ontology (1, 1)

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Description