4KC2 - JenaLib

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Title :   STRUCTURE OF THE BLOOD GROUP GLYCOSYLTRANSFERASE AAGLYB IN COMPLEX WITH A PYRIDINE INHIBITOR AS A NEUTRAL PYROPHOSPHATE SURROGATE

Authors :   J. A. Cuesta-Seijo, S. Wang, D. Lafont, S. Vidal, M. M. Palcic

Date :   24 Apr 13 (Deposition) - 11 Sep 13 (Release) - 04 Mar 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Gta Superfamily, Blood Group Proteins, Glycosyltransferase, Fuc-Gal, Udp-Gal, Udp-Galnac, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Wang, J. A. Cuesta-Seijo, D. Lafont, M. M. Palcic, S. Vidal
Design Of Glycosyltransferase Inhibitors: Pyridine As A Pyrophosphate Surrogate.
Chemistry V. 19 15346 2013
PubMed-ID: 24108680 | Reference-DOI: 10.1002/CHEM.201301871

Molecule 1 - FUCOSYLGLYCOPROTEIN ALPHA-N-ACETYLGALACTOSAMINYLTRANSFERASE SOLUBLE FORM
	Chains	:	A
	EC Number	:	2.4.1.40, 2.4.1.37
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	ABO
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	FUCOSYLGLYCOPROTEIN 3-ALPHA-GALACTOSYLTRANSFERASE, GLYCOPROTEIN-FUCOSYLGALACTOSIDE ALPHA-N- ACETYLGALACTOSAMINYLTRANSFERASE, GLYCOPROTEIN-FUCOSYLGALACTOSIDE ALPHA-GALACTOSYLTRANSFERASE, HISTO-BLOOD GROUP A TRANSFERASE, A TRANSFERASE, HISTO-BLOOD GROUP B TRANSFERASE, B TRANSFERASE, NAGAT

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 3)

No.	Name	Count	Type	Full Name
1	BHE	1	Ligand/Ion	OCTYL 2-O-(6-DEOXY-ALPHA-L-GALACTOPYRANOSYL)-BETA-D-GALACTOPYRANOSIDE
2	MN	1	Ligand/Ion	MANGANESE (II) ION
3	WS2	1	Ligand/Ion	6-(1-BETA-D-GALACTOPYRANOSYLOXYMETHYL)-N-(5'-DEOXYLURIDINE-5'-YL)PICOLINAMIDE

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	BHE	2	Ligand/Ion	OCTYL 2-O-(6-DEOXY-ALPHA-L-GALACTOPYRANOSYL)-BETA-D-GALACTOPYRANOSIDE
2	MN	-1	Ligand/Ion	MANGANESE (II) ION
3	WS2	2	Ligand/Ion	6-(1-BETA-D-GALACTOPYRANOSYLOXYMETHYL)-N-(5'-DEOXYLURIDINE-5'-YL)PICOLINAMIDE

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:213 , WS2 A:403 , HOH A:579 , HOH A:686 , HOH A:766	BINDING SITE FOR RESIDUE MN A 401
2	AC2	SOFTWARE	HIS A:233 , PHE A:236 , THR A:245 , TRP A:300 , GLU A:303 , ASP A:326 , WS2 A:403 , HOH A:591 , HOH A:684 , HOH A:686 , HOH A:694 , HOH A:767 , HOH A:773 , HOH A:775	BINDING SITE FOR RESIDUE BHE A 402
3	AC3	SOFTWARE	PHE A:121 , ALA A:122 , ILE A:123 , TYR A:126 , TRP A:181 , VAL A:184 , ARG A:188 , ASP A:211 , VAL A:212 , ASP A:213 , MN A:401 , BHE A:402 , HOH A:565 , HOH A:579 , HOH A:638 , HOH A:674 , HOH A:686 , HOH A:766	BINDING SITE FOR RESIDUE WS2 A 403

(no "SS Bond" information available for 4KC2)

(no "Cis Peptide Bond" information available for 4KC2)

(no "SAP(SNP)/Variant" information available for 4KC2)

(no "PROSITE Motif" information available for 4KC2)

(no "Exon" information available for 4KC2)

Asymmetric Unit

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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:289
                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4kc2a_ A: automated matches                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................................ee.....hhhhhhhhhhhh..eeeeeeeehhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhh........eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeee...eee....hhhhh..eeee........hhhhh........................eeeeehhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh...eee.hhhh.hhhhhh.........eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kc2 A  58 AIGEFMVSLPRMVYPQPKVLTPCRKDVLVVTPWLAPIVWEGTFNIDILNEQFRLQNTTIGLTVFAIKKYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAAVPRVTLGTGRQLSVLEVRAYKRWQDVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGTLHPGFYGSSREAFTYERRPQSQAYIPKDEGDFYYGGAFFGGSVQEVQRLTRACHQAMMVDQANGIEAVWHDESHLNKYLLRHKPTKVLSPEYLWDQQLLGWPAVLRKLRFTAVPK 346
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: Nucleotide-diphospho-sugar transferases (408)

Superfamily: Nucleotide-diphospho-sugar transferases (408)

Family: alpha-1,3-galactosyltransferase-like (125)

Protein domain: automated matches (38)

Human (Homo sapiens) [TaxId: 9606] (36)

d4kc2a_

(no "CATH Domain" information available for 4KC2)

(no "Pfam Domain" information available for 4KC2)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4kc2)

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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4kc4	STRUCTURE OF THE SAME PROTEIN WITH A RELATED SYNTHETIC INHIBITOR
4kc1	STRUCTURE OF THE SAME PROTEIN WITH A RELATED SYNTHETIC INHIBITOR

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 3)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (13, 13)

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