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(-) Description

Title :  NATIVE ANSMECPE WITH BOUND ADOMET
 
Authors :  P. J. Goldman, C. L. Drennan
Date :  10 Apr 13  (Deposition) - 08 May 13  (Release) - 12 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.62
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Adomet Radical Fold, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Goldman, T. L. Grove, L. A. Sites, M. I. Mclaughlin, S. J. Booker, C. L. Drennan
X-Ray Structure Of An Adomet Radical Activase Reveals An Anaerobic Solution For Formylglycine Posttranslational Modification.
Proc. Natl. Acad. Sci. Usa V. 110 8519 2013
PubMed-ID: 23650368  |  Reference-DOI: 10.1073/PNAS.1302417110

(-) Compounds

Molecule 1 - ANAEROBIC SULFATASE-MATURATING ENZYME
    Chains: A, B
    EC Number: 1.8.98.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CPF_0616
    Organism Scientific: CLOSTRIDIUM PERFRINGENS
    Organism Taxid: 195103
    Strain: ATCC 13124 / NCTC 8237 / TYPE A
    Synonym: ANSME, CYS-TYPE SULFATASE-ACTIVATING ENZYME

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 26)

Asymmetric Unit (4, 26)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2GOL14Ligand/IonGLYCEROL
3SAM2Ligand/IonS-ADENOSYLMETHIONINE
4SF46Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 1 (3, 11)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL7Ligand/IonGLYCEROL
3SAM1Ligand/IonS-ADENOSYLMETHIONINE
4SF43Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 2 (3, 11)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL7Ligand/IonGLYCEROL
3SAM1Ligand/IonS-ADENOSYLMETHIONINE
4SF43Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:255 , GLY A:256 , CYS A:261 , THR A:262 , GLN A:264 , CYS A:276 , CYS A:330 , ARG A:332BINDING SITE FOR RESIDUE SF4 A 501
02AC2SOFTWARECYS A:317 , CYS A:320 , CYS A:326 , CYS A:348 , LYS A:352BINDING SITE FOR RESIDUE SF4 A 502
03AC3SOFTWARECYS A:15 , LEU A:17 , CYS A:19 , CYS A:22 , HIS A:25 , GLY A:66 , ASN A:100 , ARG A:134 , SAM A:504BINDING SITE FOR RESIDUE SF4 A 503
04AC4SOFTWARETYR A:21 , CYS A:22 , PHE A:23 , TYR A:24 , GLY A:65 , GLY A:66 , GLU A:67 , GLN A:98 , THR A:99 , ASN A:100 , SER A:122 , ARG A:134 , LEU A:163 , VAL A:165 , ILE A:192 , ASN A:193 , CYS A:194 , LEU A:195 , SF4 A:503 , HOH A:607BINDING SITE FOR RESIDUE SAM A 504
05AC5SOFTWARETYR A:88 , ASN A:90 , HOH A:646 , HOH A:767 , GOL B:510BINDING SITE FOR RESIDUE GOL A 505
06AC6SOFTWARETHR A:69 , LEU A:70 , GLY A:72 , TRP A:108 , HOH A:661 , HOH A:841BINDING SITE FOR RESIDUE GOL A 506
07AC7SOFTWAREALA A:171 , ARG A:172 , HIS A:173 , VAL A:174 , ASN A:175 , LYS A:216 , ASN A:220 , HOH A:609 , HOH A:617BINDING SITE FOR RESIDUE GOL A 507
08AC8SOFTWAREARG A:234 , VAL A:235 , SER A:236 , ASP A:241 , HOH A:626BINDING SITE FOR RESIDUE GOL A 508
09AC9SOFTWAREASP A:41 , GLU A:74 , HOH A:634BINDING SITE FOR RESIDUE GOL A 509
10BC1SOFTWARETYR A:24 , ASP A:277 , PHE A:278 , TYR A:279 , VAL A:280 , LEU A:281 , HOH A:680 , HOH A:931BINDING SITE FOR RESIDUE GOL A 510
11BC2SOFTWAREASP A:223 , GLU A:227 , HOH A:629BINDING SITE FOR RESIDUE GOL A 511
12BC3SOFTWAREASN A:131 , SER A:144BINDING SITE FOR RESIDUE CL A 512
13BC4SOFTWAREPHE A:191 , ILE A:237 , ARG A:238 , TYR A:239 , HOH A:701 , HOH A:1007BINDING SITE FOR RESIDUE CL A 513
14BC5SOFTWARECYS B:255 , GLY B:256 , CYS B:261 , THR B:262 , GLN B:264 , CYS B:276 , CYS B:330 , ARG B:332BINDING SITE FOR RESIDUE SF4 B 501
15BC6SOFTWARECYS B:317 , CYS B:320 , PHE B:323 , CYS B:326 , CYS B:348 , LYS B:352BINDING SITE FOR RESIDUE SF4 B 502
16BC7SOFTWARECYS B:15 , CYS B:19 , CYS B:22 , GLY B:66 , ASN B:100 , ARG B:134 , SAM B:504BINDING SITE FOR RESIDUE SF4 B 503
17BC8SOFTWARETYR B:21 , CYS B:22 , PHE B:23 , TYR B:24 , GLY B:65 , GLY B:66 , GLU B:67 , GLN B:98 , THR B:99 , ASN B:100 , SER B:122 , ARG B:134 , LEU B:163 , VAL B:165 , ILE B:192 , ASN B:193 , CYS B:194 , LEU B:195 , SF4 B:503 , HOH B:610BINDING SITE FOR RESIDUE SAM B 504
18BC9SOFTWARETHR B:69 , TRP B:108 , HOH B:631BINDING SITE FOR RESIDUE GOL B 505
19CC1SOFTWAREALA B:171 , ARG B:172 , HIS B:173 , VAL B:174 , ASN B:175 , LYS B:216 , HOH B:668BINDING SITE FOR RESIDUE GOL B 506
20CC2SOFTWARETRP B:225 , VAL B:235 , ASP B:241 , LEU B:244 , HOH B:732 , HOH B:779 , HOH B:949BINDING SITE FOR RESIDUE GOL B 507
21CC3SOFTWARETYR B:239 , GLY B:256 , MET B:257 , CYS B:326 , GLY B:329 , TYR B:351 , PHE B:355 , HOH B:929BINDING SITE FOR RESIDUE GOL B 508
22CC4SOFTWAREASP B:277 , PHE B:278 , TYR B:279 , VAL B:280 , LEU B:281 , HOH B:713 , HOH B:728 , HOH B:945BINDING SITE FOR RESIDUE GOL B 509
23CC5SOFTWAREGOL A:505 , ASP B:136 , CYS B:137 , CYS B:138 , HOH B:625 , HOH B:693BINDING SITE FOR RESIDUE GOL B 510
24CC6SOFTWARELYS B:157 , GLU B:159 , GLU B:200 , GLU B:201BINDING SITE FOR RESIDUE GOL B 511
25CC7SOFTWAREASN B:131 , ASP B:141 , PHE B:143 , SER B:144BINDING SITE FOR RESIDUE CL B 512
26CC8SOFTWAREPHE B:191 , ARG B:238 , TYR B:239BINDING SITE FOR RESIDUE CL B 513

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4K37)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:65 -Gly A:66
2Gly B:65 -Gly B:66

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K37)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4K37)

(-) Exons   (0, 0)

(no "Exon" information available for 4K37)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:364
                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...........................hhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhh..eeeee...hhhhhhhhh.......hhhhhhhhhhhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhh...eeeeee................hhhhhhhhhhhhhhhhhhhhhh....eehhhhhhhhhhhhh...............ee....eee.hhhhhhhhhh.ee....hhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhh..hhhhh............hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k37 A   3 PLSLLIKPASSGCNLKCTYCFYHSLSVKSYGIMRDEVLESMVKRVLNEANGHCSFAFQGGEPTLAGLEFFEKLMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFLVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVTSNTARHVNKVYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFDFWYEDFLNGNRVSIRYFDGLLETILLGKSSSCGMNGTCTCQFVVESDGSVYPCDFYVLDKWRLGNIQDMTMKELFETNKNHEFIKLSFKVHEECKKCKWFRLCKGGCRRCRDSKEDSALELNYYCQSYKEFFEYAFPRLINVANNIK 370
                                    12        22     || 36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366    
                                                    28|                                                                                                                                                                                                                                                                                                                                                 
                                                     33                                                                                                                                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...............................hhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhh..eeeee...hhhhhhhhh.......hhhhhhhhhhhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhh...eeeeee................hhhhhhhhhhhhhhhhhhhhhh....eehhhhhhhhhhhhh...............ee....eee......hhhhh.ee....hhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhh..hhhhh............hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k37 B   3 PLSLLIKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEANGHCSFAFQGGEPTLAGLEFFEKLMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFLVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVTSNTARHVNKVYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFDFWYEDFLNGNRVSIRYFDGLLETILLGKSSSCGMNGTCTCQFVVESDGSVYPCDFYVLDKWRLGNIQDMTMKELFETNKNHEFIKLSFKVHEECKKCKWFRLCKGGCRRCRDSKEDSALELNYYCQSYKEFFEYAFPRLINVANNI 369
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4K37)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K37)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K37)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)

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  4k37
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  1.8.98.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ANSME_CLOP1 | Q0TTH1: 4k36 4k38 4k39

(-) Related Entries Specified in the PDB File

4k36 4k38 4k39