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4K37
Asym. Unit
Info
Asym.Unit (150 KB)
Biol.Unit 1 (73 KB)
Biol.Unit 2 (74 KB)
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(1)
Title
:
NATIVE ANSMECPE WITH BOUND ADOMET
Authors
:
P. J. Goldman, C. L. Drennan
Date
:
10 Apr 13 (Deposition) - 08 May 13 (Release) - 12 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.62
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Adomet Radical Fold, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. J. Goldman, T. L. Grove, L. A. Sites, M. I. Mclaughlin, S. J. Booker, C. L. Drennan
X-Ray Structure Of An Adomet Radical Activase Reveals An Anaerobic Solution For Formylglycine Posttranslational Modification.
Proc. Natl. Acad. Sci. Usa V. 110 8519 2013
[
close entry info
]
Hetero Components
(4, 26)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
3a: S-ADENOSYLMETHIONINE (SAMa)
3b: S-ADENOSYLMETHIONINE (SAMb)
4a: IRON/SULFUR CLUSTER (SF4a)
4b: IRON/SULFUR CLUSTER (SF4b)
4c: IRON/SULFUR CLUSTER (SF4c)
4d: IRON/SULFUR CLUSTER (SF4d)
4e: IRON/SULFUR CLUSTER (SF4e)
4f: IRON/SULFUR CLUSTER (SF4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
GOL
14
Ligand/Ion
GLYCEROL
3
SAM
2
Ligand/Ion
S-ADENOSYLMETHIONINE
4
SF4
6
Ligand/Ion
IRON/SULFUR CLUSTER
[
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:255 , GLY A:256 , CYS A:261 , THR A:262 , GLN A:264 , CYS A:276 , CYS A:330 , ARG A:332
BINDING SITE FOR RESIDUE SF4 A 501
02
AC2
SOFTWARE
CYS A:317 , CYS A:320 , CYS A:326 , CYS A:348 , LYS A:352
BINDING SITE FOR RESIDUE SF4 A 502
03
AC3
SOFTWARE
CYS A:15 , LEU A:17 , CYS A:19 , CYS A:22 , HIS A:25 , GLY A:66 , ASN A:100 , ARG A:134 , SAM A:504
BINDING SITE FOR RESIDUE SF4 A 503
04
AC4
SOFTWARE
TYR A:21 , CYS A:22 , PHE A:23 , TYR A:24 , GLY A:65 , GLY A:66 , GLU A:67 , GLN A:98 , THR A:99 , ASN A:100 , SER A:122 , ARG A:134 , LEU A:163 , VAL A:165 , ILE A:192 , ASN A:193 , CYS A:194 , LEU A:195 , SF4 A:503 , HOH A:607
BINDING SITE FOR RESIDUE SAM A 504
05
AC5
SOFTWARE
TYR A:88 , ASN A:90 , HOH A:646 , HOH A:767 , GOL B:510
BINDING SITE FOR RESIDUE GOL A 505
06
AC6
SOFTWARE
THR A:69 , LEU A:70 , GLY A:72 , TRP A:108 , HOH A:661 , HOH A:841
BINDING SITE FOR RESIDUE GOL A 506
07
AC7
SOFTWARE
ALA A:171 , ARG A:172 , HIS A:173 , VAL A:174 , ASN A:175 , LYS A:216 , ASN A:220 , HOH A:609 , HOH A:617
BINDING SITE FOR RESIDUE GOL A 507
08
AC8
SOFTWARE
ARG A:234 , VAL A:235 , SER A:236 , ASP A:241 , HOH A:626
BINDING SITE FOR RESIDUE GOL A 508
09
AC9
SOFTWARE
ASP A:41 , GLU A:74 , HOH A:634
BINDING SITE FOR RESIDUE GOL A 509
10
BC1
SOFTWARE
TYR A:24 , ASP A:277 , PHE A:278 , TYR A:279 , VAL A:280 , LEU A:281 , HOH A:680 , HOH A:931
BINDING SITE FOR RESIDUE GOL A 510
11
BC2
SOFTWARE
ASP A:223 , GLU A:227 , HOH A:629
BINDING SITE FOR RESIDUE GOL A 511
12
BC3
SOFTWARE
ASN A:131 , SER A:144
BINDING SITE FOR RESIDUE CL A 512
13
BC4
SOFTWARE
PHE A:191 , ILE A:237 , ARG A:238 , TYR A:239 , HOH A:701 , HOH A:1007
BINDING SITE FOR RESIDUE CL A 513
14
BC5
SOFTWARE
CYS B:255 , GLY B:256 , CYS B:261 , THR B:262 , GLN B:264 , CYS B:276 , CYS B:330 , ARG B:332
BINDING SITE FOR RESIDUE SF4 B 501
15
BC6
SOFTWARE
CYS B:317 , CYS B:320 , PHE B:323 , CYS B:326 , CYS B:348 , LYS B:352
BINDING SITE FOR RESIDUE SF4 B 502
16
BC7
SOFTWARE
CYS B:15 , CYS B:19 , CYS B:22 , GLY B:66 , ASN B:100 , ARG B:134 , SAM B:504
BINDING SITE FOR RESIDUE SF4 B 503
17
BC8
SOFTWARE
TYR B:21 , CYS B:22 , PHE B:23 , TYR B:24 , GLY B:65 , GLY B:66 , GLU B:67 , GLN B:98 , THR B:99 , ASN B:100 , SER B:122 , ARG B:134 , LEU B:163 , VAL B:165 , ILE B:192 , ASN B:193 , CYS B:194 , LEU B:195 , SF4 B:503 , HOH B:610
BINDING SITE FOR RESIDUE SAM B 504
18
BC9
SOFTWARE
THR B:69 , TRP B:108 , HOH B:631
BINDING SITE FOR RESIDUE GOL B 505
19
CC1
SOFTWARE
ALA B:171 , ARG B:172 , HIS B:173 , VAL B:174 , ASN B:175 , LYS B:216 , HOH B:668
BINDING SITE FOR RESIDUE GOL B 506
20
CC2
SOFTWARE
TRP B:225 , VAL B:235 , ASP B:241 , LEU B:244 , HOH B:732 , HOH B:779 , HOH B:949
BINDING SITE FOR RESIDUE GOL B 507
21
CC3
SOFTWARE
TYR B:239 , GLY B:256 , MET B:257 , CYS B:326 , GLY B:329 , TYR B:351 , PHE B:355 , HOH B:929
BINDING SITE FOR RESIDUE GOL B 508
22
CC4
SOFTWARE
ASP B:277 , PHE B:278 , TYR B:279 , VAL B:280 , LEU B:281 , HOH B:713 , HOH B:728 , HOH B:945
BINDING SITE FOR RESIDUE GOL B 509
23
CC5
SOFTWARE
GOL A:505 , ASP B:136 , CYS B:137 , CYS B:138 , HOH B:625 , HOH B:693
BINDING SITE FOR RESIDUE GOL B 510
24
CC6
SOFTWARE
LYS B:157 , GLU B:159 , GLU B:200 , GLU B:201
BINDING SITE FOR RESIDUE GOL B 511
25
CC7
SOFTWARE
ASN B:131 , ASP B:141 , PHE B:143 , SER B:144
BINDING SITE FOR RESIDUE CL B 512
26
CC8
SOFTWARE
PHE B:191 , ARG B:238 , TYR B:239
BINDING SITE FOR RESIDUE CL B 513
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Atom Selection
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Protein & NOT Site
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Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Asym.Unit (150 KB)
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Biol.Unit 1 (73 KB)
Header - Biol.Unit 1
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