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(-) Description

Title :  NATIVE ANSMECPE WITH BOUND ADOMET AND CP18CYS PEPTIDE
 
Authors :  P. J. Goldman, C. L. Drennan
Date :  10 Apr 13  (Deposition) - 08 May 13  (Release) - 12 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.78
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Adomet Radical Fold, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Goldman, T. L. Grove, L. A. Sites, M. I. Mclaughlin, S. J. Booker, C. L. Drennan
X-Ray Structure Of An Adomet Radical Activase Reveals An Anaerobic Solution For Formylglycine Posttranslational Modification.
Proc. Natl. Acad. Sci. Usa V. 110 8519 2013
PubMed-ID: 23650368  |  Reference-DOI: 10.1073/PNAS.1302417110

(-) Compounds

Molecule 1 - ANAEROBIC SULFATASE-MATURATING ENZYME
    Chains: A, B
    EC Number: 1.8.98.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CPF_0616
    Organism Scientific: CLOSTRIDIUM PERFRINGENS
    Organism Taxid: 195103
    Strain: ATCC 13124 / NCTC 8237 / TYPE A
    Synonym: ANSME, CYS-TYPE SULFATASE-ACTIVATING ENZYME
 
Molecule 2 - CP18CYS PEPTIDE
    Chains: D, C
    Engineered: YES
    Other Details: STANDARD FMOC CHEMISTRY
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric Unit (4, 11)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL3Ligand/IonGLYCEROL
3SAM1Ligand/IonS-ADENOSYLMETHIONINE
4SF46Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3SAM1Ligand/IonS-ADENOSYLMETHIONINE
4SF43Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3SAM-1Ligand/IonS-ADENOSYLMETHIONINE
4SF43Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:255 , GLY A:256 , CYS A:261 , THR A:262 , GLN A:264 , CYS A:276 , CYS A:330 , ARG A:332BINDING SITE FOR RESIDUE SF4 A 501
02AC2SOFTWARECYS A:317 , CYS A:320 , CYS A:326 , CYS A:348 , LYS A:352BINDING SITE FOR RESIDUE SF4 A 502
03AC3SOFTWARECYS A:15 , CYS A:19 , CYS A:22 , GLY A:66 , ASN A:100 , ARG A:134 , SAM A:504BINDING SITE FOR RESIDUE SF4 A 503
04AC4SOFTWARETYR A:21 , PHE A:23 , GLY A:65 , GLY A:66 , GLU A:67 , GLN A:98 , THR A:99 , ASN A:100 , SER A:122 , ARG A:134 , LEU A:163 , VAL A:165 , ILE A:192 , ASN A:193 , CYS A:194 , LEU A:195 , SF4 A:503BINDING SITE FOR RESIDUE SAM A 504
05AC5SOFTWAREALA A:171 , ARG A:172 , HIS A:173 , VAL A:174 , ASN A:175 , ASN A:220BINDING SITE FOR RESIDUE GOL A 505
06AC6SOFTWAREMET A:292 , GLU A:296 , THR A:300 , HOH A:771BINDING SITE FOR RESIDUE GOL A 506
07AC7SOFTWARECYS B:255 , GLY B:256 , CYS B:261 , THR B:262 , CYS B:276 , CYS B:330 , ARG B:332BINDING SITE FOR RESIDUE SF4 B 501
08AC8SOFTWAREGLU B:316 , CYS B:317 , CYS B:320 , CYS B:326 , CYS B:348BINDING SITE FOR RESIDUE SF4 B 502
09AC9SOFTWARECYS B:15 , LEU B:17 , CYS B:19 , CYS B:22 , HIS B:25 , ARG B:134 , HOH B:808BINDING SITE FOR RESIDUE SF4 B 503
10BC1SOFTWAREPHE B:191 , TYR B:239 , HOH B:663 , HOH B:724BINDING SITE FOR RESIDUE CL B 504
11BC2SOFTWARETYR B:21 , ILE B:192BINDING SITE FOR RESIDUE GOL B 505
12BC3SOFTWAREGLN A:64 , SER A:96 , LEU A:118 , GLY A:120 , GLU A:159 , PHE A:160 , ASN A:161 , LEU A:163 , PHE A:188 , GLN A:190 , ILE A:192 , ARG A:238 , SER A:253 , SER A:254 , CYS A:255 , GLN A:264 , ASP A:277 , HOH A:765 , HOH A:850 , HOH C:101 , HOH C:102BINDING SITE FOR CHAIN C OF CP18CYS PEPTIDE
13BC4SOFTWAREALA B:62 , SER B:96 , LEU B:118 , GLY B:120 , GLU B:159 , PHE B:160 , ASN B:161 , PHE B:188 , GLN B:190 , ILE B:192 , GLU B:201 , GLU B:245 , SER B:253 , SER B:254 , CYS B:255 , GLN B:264 , ASP B:277 , HOH B:635 , HOH B:701 , HOH D:102 , HOH D:103 , HOH D:105BINDING SITE FOR CHAIN D OF CP18CYS PEPTIDE

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4K39)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:65 -Gly A:66
2Gly B:65 -Gly B:66

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K39)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4K39)

(-) Exons   (0, 0)

(no "Exon" information available for 4K39)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:361
                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......................hhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhh..eeeee...hhhhhhh.........hhhhhhhhhhhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhh...eeeeee................hhhhhhhhhhhhhhhhhhhhhh....eehhhhhhhhhhhhh...............ee....eee.hhhhhhhhhh.ee....hhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhh..hhhhh............hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k39 A   2 PPLSLLIKPASSGCNLKCTYCFYHKSYGIMRDEVLESMVKRVLNEANGHCSFAFQGGEPTLAGLEFFEKLMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFLVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVTSNTARHVNKVYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFDFWYEDFLNGNRVSIRYFDGLLETILLGKSSSCGMNGTCTCQFVVESDGSVYPCDFYVLDKWRLGNIQDMTMKELFETNKNHEFIKLSFKVHEECKKCKWFRLCKGGCRRCRDSKEDSALELNYYCQSYKEFFEYAFPRLINVANNIK 370
                                    11        21   ||   39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369 
                                                  25|                                                                                                                                                                                                                                                                                                                                                
                                                   34                                                                                                                                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:359
                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee......................hhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhh..eeeee...hhhhhhhhh.......hhhhhhhhhhhhhhhh.eeeeeeee..hhhhhhhhhhhhhhhh...eeeeee................hhhhhhhhhhhhhhhhhhhhhh....eehhhhhhhhhhhhh...............ee....eee.hhhhhhhhhh.ee....hhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhh..hhhhhh...........hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k39 B   2 PPLSLLIKPASSGCNLKCTYCFYHSYGIMRDEVLESMVKRVLNEANGHCSFAFQGGEPTLAGLEFFEKLMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFLVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVTSNTARHVNKVYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFDFWYEDFLNGNRVSIRYFDGLLETILLGKSSSCGMNGTCTCQFVVESDGSVYPCDFYVLDKWRLGNIQDMTMKELFETNKNHEFIKLSFKVHEECKKCKWFRLCKGGCRRCRDSKEDSALELNYYCQSYKEFFEYAFPRLINVANNI 369
                                    11        21   ||   40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360         
                                                  25|                                                                                                                                                                                                                                                                                                                                              
                                                   35                                                                                                                                                                                                                                                                                                                                              


Chain C from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 4k39 C   3 AVPSCIPSRA  12
                                    12


Chain D from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 4k39 D   3 AVPSCIPSRA  12
                                    12
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4K39)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K39)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K39)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ANSME_CLOP1 | Q0TTH1: 4k36 4k37 4k38

(-) Related Entries Specified in the PDB File

4k36 4k37 4k38