4K36 - JenaLib

Title :   HIS6 TAGGED ANSMECPE WITH BOUND ADOMET

Authors :   P. J. Goldman, C. L. Drennan

Date :   10 Apr 13 (Deposition) - 08 May 13 (Release) - 12 Jun 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.62

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Adomet Radical Fold, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. J. Goldman, T. L. Grove, L. A. Sites, M. I. Mclaughlin, S. J. Booker, C. L. Drennan
X-Ray Structure Of An Adomet Radical Activase Reveals An Anaerobic Solution For Formylglycine Posttranslational Modification.
Proc. Natl. Acad. Sci. Usa V. 110 8519 2013
PubMed-ID: 23650368 | Reference-DOI: 10.1073/PNAS.1302417110

Compounds

Molecule 1 - ANAEROBIC SULFATASE-MATURATING ENZYME
	Chains	:	A, B
	EC Number	:	1.8.98.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	CPF_0616
	Organism Scientific	:	CLOSTRIDIUM PERFRINGENS
	Organism Taxid	:	195103
	Strain	:	ATCC 13124 / NCTC 8237 / TYPE A
	Synonym	:	ANSME, CYS-TYPE SULFATASE-ACTIVATING ENZYME

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 11)

Asymmetric Unit (3, 11)

No.	Name	Count	Type	Full Name
1	CL	3	Ligand/Ion	CHLORIDE ION
2	SAM	2	Ligand/Ion	S-ADENOSYLMETHIONINE
3	SF4	6	Ligand/Ion	IRON/SULFUR CLUSTER

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	SAM	1	Ligand/Ion	S-ADENOSYLMETHIONINE
3	SF4	3	Ligand/Ion	IRON/SULFUR CLUSTER

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	SAM	1	Ligand/Ion	S-ADENOSYLMETHIONINE
3	SF4	3	Ligand/Ion	IRON/SULFUR CLUSTER

Sites (11, 11)

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS A:255 , GLY A:256 , CYS A:261 , THR A:262 , GLN A:264 , CYS A:276 , CYS A:330 , ARG A:332	BINDING SITE FOR RESIDUE SF4 A 501
02	AC2	SOFTWARE	GLU A:316 , CYS A:317 , CYS A:320 , CYS A:326 , CYS A:348	BINDING SITE FOR RESIDUE SF4 A 502
03	AC3	SOFTWARE	CYS A:15 , LEU A:17 , CYS A:19 , CYS A:22 , HIS A:25 , GLY A:66 , ASN A:100 , ARG A:134 , SAM A:504	BINDING SITE FOR RESIDUE SF4 A 503
04	AC4	SOFTWARE	TYR A:21 , CYS A:22 , PHE A:23 , TYR A:24 , GLY A:65 , GLY A:66 , GLU A:67 , GLN A:98 , THR A:99 , ASN A:100 , SER A:122 , ARG A:134 , LEU A:163 , VAL A:165 , ILE A:192 , ASN A:193 , CYS A:194 , LEU A:195 , SF4 A:503 , HOH A:604	BINDING SITE FOR RESIDUE SAM A 504
05	AC5	SOFTWARE	PHE A:191 , ILE A:237 , ARG A:238 , TYR A:239	BINDING SITE FOR RESIDUE CL A 505
06	AC6	SOFTWARE	CYS B:255 , GLY B:256 , CYS B:261 , THR B:262 , GLN B:264 , CYS B:276 , CYS B:330 , ARG B:332	BINDING SITE FOR RESIDUE SF4 B 501
07	AC7	SOFTWARE	CYS B:317 , CYS B:320 , CYS B:326 , CYS B:348 , LYS B:352	BINDING SITE FOR RESIDUE SF4 B 502
08	AC8	SOFTWARE	CYS B:15 , CYS B:19 , CYS B:22 , HIS B:25 , GLY B:66 , ASN B:100 , ARG B:134 , SAM B:504	BINDING SITE FOR RESIDUE SF4 B 503
09	AC9	SOFTWARE	TYR B:21 , CYS B:22 , PHE B:23 , TYR B:24 , GLY B:65 , GLY B:66 , GLU B:67 , GLN B:98 , THR B:99 , ASN B:100 , SER B:122 , ARG B:134 , LEU B:163 , VAL B:165 , ILE B:192 , ASN B:193 , CYS B:194 , LEU B:195 , SF4 B:503	BINDING SITE FOR RESIDUE SAM B 504
10	BC1	SOFTWARE	PHE B:191 , ILE B:237 , ARG B:238 , TYR B:239 , HOH B:803	BINDING SITE FOR RESIDUE CL B 505
11	BC2	SOFTWARE	ASN B:131 , ASP B:141 , PHE B:143 , SER B:144 , HOH B:795	BINDING SITE FOR RESIDUE CL B 506

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:381
                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.............................hhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhh..eeeee...hhhhhhhhh.......hhhhhhhhhhhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhh...eeeeee................hhhhhhhhhhhhhhhhhhhhhh....eehhhhhhhhhhhhh...............ee....eee.hhhhhhhhhh.ee....hhhhhhhhhhhhhhhhhh...hhhhhhh.hhhhhh..hhhhh............hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k36 A   2 PPLSLLIKPASSGCNLKCTYCFYHSLSDNVKSYGIMRDEVLESMVKRVLNEANGHCSFAFQGGEPTLAGLEFFEKLMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFLVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVTSNTARHVNKVYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFDFWYEDFLNGNRVSIRYFDGLLETILLGKSSSCGMNGTCTCQFVVESDGSVYPCDFYVLDKWRLGNIQDMTMKELFETNKNHEFIKLSFKVHEECKKCKWFRLCKGGCRRCRDSKEDSALELNYYCQSYKEFFEYAFPRLINVANNIVDKLAAALEHHHHHH 392
                                    11        21        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363     ||381       391 
                                                       30|                                                                                                                                                                                                                                                                                                                                             369|              
                                                        33                                                                                                                                                                                                                                                                                                                                              378

Chain B from PDB  Type:PROTEIN  Length:364
                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..........................hhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhh..eeeee...hhhhhhhhh.......hhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhhhh...eeeeee................hhhhhhhhhhhhhhhhhhhhhh....eehhhhhhhhhhhhh...............ee....eee.hhhhhhhhhh.ee....hhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhh..hhhhh............hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k36 B   2 PPLSLLIKPASSGCNLKCTYCFYHSLVKSYGIMRDEVLESMVKRVLNEANGHCSFAFQGGEPTLAGLEFFEKLMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFLVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVTSNTARHVNKVYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFDFWYEDFLNGNRVSIRYFDGLLETILLGKSSSCGMNGTCTCQFVVESDGSVYPCDFYVLDKWRLGNIQDMTMKELFETNKNHEFIKLSFKVHEECKKCKWFRLCKGGCRRCRDSKEDSALELNYYCQSYKEFFEYAFPRLINVANNIH 387
                                    11        21     || 36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366  ||
                                                    27|                                                                                                                                                                                                                                                                                                                                             369|
                                                     33                                                                                                                                                                                                                                                                                                                                              387

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

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	Cis Peptide Bonds
		Gly A:65 - Gly A:66	[ RasMol ]
		Gly B:65 - Gly B:66	[ RasMol ]

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	4k36
		Family and Domain Information	:	ProDom \| SYSTERS
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Description