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(-) Description

Title :  CRYSTAL STRUCTURE OF SERINE/THREONINE-PROTEIN KINASE PAK 4 F461V MUTANT IN COMPLEX WITH PAKTIDE S PEPTIDE SUBSTRATE
 
Authors :  B. H. Ha, T. J. Boggon
Date :  25 Feb 13  (Deposition) - 29 Jan 14  (Release) - 29 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase-Peptide Complex, Transferase/Peptide, Serine/Threonine- Protein Kinase Pak4, Atp Binding, Phosphorylation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chen, B. H. Ha, A. F. Thevenin, H. J. Lou, R. Zhang, K. Y. Yip, J. R. Peterson, M. Gerstein, P. M. Kim, P. Filippakopoulos, S. Knapp, T. J. Boggon, B. E. Turk
Identification Of A Major Determinant For Serine-Threonine Kinase Phosphoacceptor Specificity.
Mol. Cell V. 53 140 2014
PubMed-ID: 24374310  |  Reference-DOI: 10.1016/J.MOLCEL.2013.11.013

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE PAK 4
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: MODIFIED PET28A
    Expression System Strain: BL21(DE3)RILP
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: KIAA1142, PAK4
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: P21-ACTIVATED KINASE 4, PAK-4
 
Molecule 2 - PAKTIDE S
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1SEP1Mod. Amino AcidPHOSPHOSERINE
2TPO1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:331 , GLN A:357 , GLN A:358 , ARG A:359 , LEU A:362 , THR A:404 , ASP A:440 , LYS A:442 , SER A:443 , ASP A:444 , VAL A:461 , LEU A:475 , GLY A:477 , THR A:478 , PRO A:479 , TYR A:480 , TRP A:481 , GLU A:507 , PHE A:516 , LEU A:521 , MET A:524 , HOH B:101BINDING SITE FOR CHAIN B OF PAKTIDE S

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JDK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JDK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JDK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JDK)

(-) Exons   (0, 0)

(no "Exon" information available for 4JDK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4jdka_ A: automated matches                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh.....hhhh.eeeeeeeee....eeeeeee.....eeeeeeee.hhh.hhhhhhhhhhhhhhh.......eeeeeee..eeeeee......hhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.............hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh......hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdk A 300 SHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGVCAQVSKEVPRRKsLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRAtAAELLKHPFLAKAGPPASIVPLMRQNR 589
                                   309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469    |  479       489       499       509       519       529       539       549       559  |    569       579       589
                                                                                                                                                                                                        474-SEP                                                                                 562-TPO                       


Chain B from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 4jdk B  -3 RRRSWY   2
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JDK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JDK)

(-) Gene Ontology  (25, 25)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAK4_HUMAN | O96013: 2bva 2cdz 2j0i 2ov2 2q0n 2x4z 4app 4fie 4fif 4fig 4fih 4fii 4fij 4jdh 4jdi 4jdj 4l67 4njd 4o0v 4o0x 4o0y 4xbr 4xbu 5bms 5i0b

(-) Related Entries Specified in the PDB File

4fij 4jdh 4jdi 4jdj