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(-) Description

Title :  THE NATA ACETYLTRANSFERASE COMPLEX BOUND TO PPGPP
 
Authors :  J. L. Neubauer, R. M. Immormino, D. E. Dollins, S. T. Endo-Streeter, C. W Iv, J. D. York
Date :  21 Oct 12  (Deposition) - 26 Mar 14  (Release) - 26 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.34
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Gnat/Tpr, N-Terminal Acetyltransferase, Ppgpp, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Neubauer, T. Pham, R. M. Immormino, D. E. Dollins, S. T. Endo-Streeter, S. Li, C. W. Pemble Iv, J. D. York
The Protein Complex Nata Binds Inositol Hexakisphosphate An Exhibits Conformational Flexibility
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - N-TERMINAL ACETYLTRANSFERASE A COMPLEX SUBUNIT NAT1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: 22B
    Expression System Strain: ROSETTA
    Expression System Taxid: 562
    Expression System Vector Type: PET
    Gene: NAT1, AAA1, YDL040C, D2720
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE S288C
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: NATA COMPLEX SUBUNIT NAT1, AMINO-TERMINAL, ALPHA-AMINO, ACETYLTRANSFERASE 1
 
Molecule 2 - N-TERMINAL ACETYLTRANSFERASE A COMPLEX CATALYTIC SUBUNIT ARD1
    Chains: B
    EC Number: 2.3.1.88
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: 30B
    Expression System Strain: ROSETTA
    Expression System Taxid: 562
    Expression System Vector Type: PET
    Gene: ARD1, YHR013C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE S288C
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: NATA COMPLEX SUBUNIT ARD1, ARREST-DEFECTIVE PROTEIN 1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1G4P1Ligand/IonGUANOSINE-5',3'-TETRAPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:349 , ARG A:426 , LYS A:429 , HIS A:430 , LYS A:457 , LYS A:460 , TYR A:461 , ARG A:464 , LYS B:80 , LEU B:81 , ASP B:82 , TYR B:85 , PRO B:88BINDING SITE FOR RESIDUE G4P A 901

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HNX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HNX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HNX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HNX)

(-) Exons   (0, 0)

(no "Exon" information available for 4HNX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:713
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhh........hhhhhhhhhhh....hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hnx A  18 KKENDQFLEALKLYEGKQYKKSLKLLDAILKKGSHVDSLALKGLDLYSVGEKDDAASYVANAIRKIEGASASPICCHVLGIYMRNTKEYKESIKWFTAALNNGSTNKQIYRDLATLQSQIGDFKNALVSRKKYWEAFLGYRANWTSLAVAQDVNGERQQAINTLSQFEKLAEGKISDSEKYEHSECLMYKNDIMYKAASDNQDKLQNVLKHLNDIEPCVFDKFGLLERKATIYMKLGQLKDASIVYRTLIKRNPDNFKYYKLLEVSLGIQGDNKLKKALYGKLEQFYPRCEPPKFIPLTFLQDKEELSKKLREYVLPQLERGVPATFSNVKPLYQRRKSKVSPLLEKIVLDYLSGLDPTQDPIPFIWTNYYLSQHFLFLKDFPKAQEYIDAALDHTPTLVEFYILKARILKHLGLMDTAAGILEEGRQLDLQDRFINCKTVKYFLRANNIDKAVEVASLFTVEASWFIVEQAEAYYRLYLDRKKKLDDLAESDKSEQIANDIKENQWLVRKYKGLALKRFNAIPKFYKQFEDDQLDFHSYCMRKGTPRAYLEMLEWGKALYTKPMYVRAMKEASKLYFQMHDDRLDVFGEKLIETSTPMEDFATEFYNNYSMQVREDERDYILDFEFNYRIGKLALCFASLNKFAKRFGTTSGLFGSMAIVLLHANDINGLLFLYRYRDDVPIGSSNLKEMIISSLSPLEPHSQNEILQYYLY 855
                                    27        37        47 ||     58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478||     502       512       522|      538       548       558       568       578       588       598       608       618    || 683       693       703       713       723       733       743       753    || 812       822       832       842       852   
                                                          49|                                                                                                                                                                                                                                                                                                                                                                                                                                         479|                         522|                                                                                           623|                                                                            758|                                               
                                                           51                                                                                                                                                                                                                                                                                                                                                                                                                                          494                          529                                                                                            679                                                                             808                                               


Chain B from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhh.....hhhhhhhhhhhhhhhh....eeeee...........eee..eeeeeeeeeee..hhhhh....eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh....eeeeee.........eeeeeee.hhhhhhhhhhh............hhhhhh.hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hnx B   2 PINIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPNGHITSLSVMRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSYYQDGEDAYAMKKVLKLEELQISNFTHRKLEDDLESDLLEDIIKQGVNDIIVEQKLISE 245
                                    11        21        31        41        51  ||    85        95       105       115       125       135       145       155       165       175       185       195       205 ||    222       232       242   
                                                                               54|                                                                                                                             207|                              
                                                                                79                                                                                                                              215
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HNX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HNX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HNX)

(-) Gene Ontology  (29, 36)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARD1_YEAST | P07347: 4hnw 4hny 4xnh 4xpd 4y49
        NAT1_YEAST | P12945: 4hnw 4hny 4xnh 4xpd 4y49
        UTP21_YEAST | Q06078: 4nsx 5jpq 5tzs 5wyj 5wyk

(-) Related Entries Specified in the PDB File

4hnw 4hny