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(-) Description

Title :  CRYSTAL STRUCTURE OF THE UTP21 TANDEM WD DOMAIN
 
Authors :  C. Zhang, K. Ye
Date :  29 Nov 13  (Deposition) - 19 Feb 14  (Release) - 19 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Ribosome Biogenesis, Utpb Complex, 90S Preribosome, Small Subunit Processome, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Zhang, J. Lin, W. Liu, X. Chen, R. Chen, K. Ye
Structure Of Utp21 Tandem Wd Domain Provides Insight Into The Organization Of The Utpb Complex Involved In Ribosome Synthesis
Plos One V. 9 86540 2014
PubMed-ID: 24466140  |  Reference-DOI: 10.1371/JOURNAL.PONE.0086540

(-) Compounds

Molecule 1 - U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 21
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: TANDEM WD DOMAIN 1-684
    Gene: L8084.22, UTP21, YLR409C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: U3 SNORNA-ASSOCIATED PROTEIN 21, U THREE PROTEIN 21

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:49 , ILE A:60 , PHE A:70 , HIS A:88 , TYR A:89 , VAL A:90 , LYS A:102 , ARG A:103 , HOH A:1068BINDING SITE FOR RESIDUE FLC A 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NSX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NSX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NSX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NSX)

(-) Exons   (0, 0)

(no "Exon" information available for 4NSX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:634
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.........eeeee..eeeeeee....eeeee.....eeee..........eeeee..eeeeee..eeeeee..eeeeeee......eeeeeee..eeeeee...eeeeee..........eeeeeee........eeeee.......eeeeee...eeeee.....eeee.......eeeeee.....eeeeee...eeeeee....eeeeeee.....eeeeee......eeeeee....eeeee....eeeeee....hhhhh...eeee.....eeeee....eeeeee......eeeeeee.....eeeeee......eeeeee....eeeee......eee.........eeeeee..........eeeee....eeeeee....eeeeeeee......eeeeee.....eeeeee...eeeeee.....eeeeee.....eeeeee.....eeeeee...eeeeee.....eeeeee....eeeeee.....eeeeee....eeeee....eeeeee......eeeeee.....eeeeee...eeeeee.....eeeeee....eeeeee.....eeeeee.....eeeeee.............ee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nsx A  20 NSKIFSPFRIIGNVSNGVPFATGTLGSTFYIVTCVGKTFQIYDANTLHLLFVSEKETPSSIVALSAHFHYVYAAYENKVGIYKRGIEEHLLELETDANVEHLCIFGDYLCASTDDNSIFIYKKSDPQDKYPSEFYTKLTVTEIQGGEIVSLQHLATYLNKLTVVTKSNVLLFNVRTGKLVFTSNEFPDQITTAEPAPVLDIIALGTVTGEVIMFNMRKGKRIRTIKIPQSRISSLSFRTDGSSHLSVGTSSGDLIFYDLDRRSRIHVLKNIHRESYGGVTQATFLNGQPIIVTSGGDNSLKEYVFDPQPPRYLRSRGGHSQPPSYIAFADSQSHFMLSASKDRSLWSFSLRKDAQSQEMSQRSKFPEIVALAIENARIGEWENIITAHKDEKFARTWDMRNKRVGRWTFDTTDDGFVKSVAMSQCGNFGFIGSSNGSITIYNMQSGILRKKYKLHKRAVTGISLDGMNRKMVSCGLDGIVGFYDFNKSTLLGKLKLDAPITAMVYHRSSDLFALALDDLSIVVIDAVTQRVVRQLWGHSNRITAFDFSPEGRWIVSASLDSTIRTWDLPTGGCIDGIIVDNVATNVKFSPNGDLLATTHVTGNGICIWTNRAQSTRTIDESEFARMALPSTSVR 684
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319      |340       350       360       370       380       390 ||    416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656  ||   670       680    
                                                                                                                                                                                                                                                                                                                                            326|                                                   392|                                                                                                                                                                                                                                                       659|                    
                                                                                                                                                                                                                                                                                                                                             338                                                    409                                                                                                                                                                                                                                                        664
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NSX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NSX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NSX)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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  4nsx
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  UTP21_YEAST | Q06078
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        UTP21_YEAST | Q06078: 4hnx 5jpq 5tzs 5wyj 5wyk

(-) Related Entries Specified in the PDB File

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