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(-) Description

Title :  THE NATA ACETYLTRANSFERASE COMPLEX BOUND TO INOSITOL HEXAKISPHOSPHATE
 
Authors :  J. L. Neubauer, R. M. Immormino, D. E. Dollins, S. T. Endo-Streeter, C. W Iv, J. D. York
Date :  21 Oct 12  (Deposition) - 26 Mar 14  (Release) - 26 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Gnat/Tpr, N-Terminal Acetyltransferase, Inositol Hexakisphosphate, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Neubauer, T. Pham, R. M. Immormino, D. E. Dollins, S. T. Endo-Streeter, S. Li, C. W. Pemble Iv, J. D. York
The Protein Complex Nata Binds Inositol Hexakisphosphate An Exhibits Conformational Flexibility
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - N-TERMINAL ACETYLTRANSFERASE A COMPLEX SUBUNIT NAT1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: 22B
    Expression System Strain: ROSETTA
    Expression System Taxid: 562
    Expression System Vector Type: PET
    Gene: NAT1, AAA1, YDL040C, D2720
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE S288C
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: NATA COMPLEX SUBUNIT NAT1, AMINO-TERMINAL, ALPHA-AMINO, ACETYLTRANSFERASE 1
 
Molecule 2 - N-TERMINAL ACETYLTRANSFERASE A COMPLEX CATALYTIC SUBUNIT ARD1
    Chains: B
    EC Number: 2.3.1.88
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: 30B
    Expression System Strain: ROSETTA
    Expression System Taxid: 562
    Expression System Vector Type: PET
    Gene: ARD1, YHR013C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE S288C
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: NATA COMPLEX SUBUNIT ARD1, ARREST-DEFECTIVE PROTEIN 1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1IHP1Ligand/IonINOSITOL HEXAKISPHOSPHATE
2PG45Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:349 , ARG A:426 , LYS A:429 , HIS A:430 , LYS A:457 , LYS A:460 , TYR A:461 , ARG A:464 , HOH A:1013 , HOH A:1018 , TYR B:85 , LYS B:91BINDING SITE FOR RESIDUE IHP A 901
2AC2SOFTWARELYS A:149 , ASP A:408 , TYR A:421 , LYS A:424 , GLU A:443BINDING SITE FOR RESIDUE PG4 A 902
3AC3SOFTWARETYR A:128 , LYS A:150 , GLU A:153 , ALA A:154 , ASP A:408BINDING SITE FOR RESIDUE PG4 A 903
4AC4SOFTWAREASP A:221 , LYS A:222 , ASN A:225 , ASP A:469 , GLU A:473BINDING SITE FOR RESIDUE PG4 A 904
5AC5SOFTWARELYS A:563 , TYR A:672 , GLN A:676 , HOH A:1027BINDING SITE FOR RESIDUE PG4 A 905
6AC6SOFTWAREGLU A:593 , LYS A:596BINDING SITE FOR RESIDUE PG4 A 906

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HNW)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Arg A:760 -Asn A:761
2Asp A:762 -Thr A:763

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HNW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HNW)

(-) Exons   (0, 0)

(no "Exon" information available for 4HNW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:782
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhh..........hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..hhhhh....hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhh.......hhhhhhhhhh......hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hnw A  15 IALKKENDQFLEALKLYEGKQYKKSLKLLDAILKKDGSHVDSLALKGLDLYSVGEKDDAASYVANAIRKIESASPICCHVLGIYMRNTKEYKESIKWFTAALNNGSTNKQIYRDLATLQSQIGDFKNALVSRKKYWEAFLGYRANWTSLAVAQDVNGERQQAINTLSQFEKLAEGKISDSEKYEHSECLMYKNDIMYKAASDNQDKLQNVLKHLNDIEPCVFDKFGLLERKATIYMKLGQLKDASIVYRTLIKRNPDNFKYYKLLEVSLGIQGDNKLKKALYGKLEQFYPRCEPPKFIPLTFLQDKEELSKKLREYVLPQLERGVPATFSNVKPLYQRRKSKVSPLLEKIVLDYLSGLDPTQDPIPFIWTNYYLSQHFLFLKDFPKAQEYIDAALDHTPTLVEFYILKARILKHLGLMDTAAGILEEGRQLDLQDRFINCKTVKYFLRANNIDKAVEVASLFTKNDDSVNGIKDLHLVEASWFIVEQAEAYYRLYLDRKKKLDDLASEQIANDIKENQWLVRKYKGLALKRFNAIPKFYKQFEDDQLDFHSYCMRKGTPRAYLEMLEWGKALYTKPMYVRAMKEASKLYFQMHDDRLKRSQKKKAKKEAAAMNKRKETEAKSVAAYPSDQDNDVFGEKLIETSTPMEDFATEFYNNYSMQVREDERDYILDFEFNYRIGKLALCFASLNKFAKRFGTTSGLFGSMAIVLLHATRNDTPFDPILKKVVTKSLEKNDINGLLFLYRYRDDVPIGSSNLKEMIISSLSPLEPHSQNEILQYYLYP 856
                                    24        34        44        54        64        74        84||      96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516     ||536       546       556       566       576       586       596       606       616       646       656       666       676       686       696       706       716       726       736       746       756       766       776  ||   814       824       834       844       854  
                                                                                                 85|                                                                                                                                                                                                                                                                                                                                                                                                                                               522|                                                                                         625|                                                                                                                                  779|                                                
                                                                                                  88                                                                                                                                                                                                                                                                                                                                                                                                                                                533                                                                                          646                                                                                                                                   808                                                


Chain B from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhhhhh....hhhhhhhhhh......eeeee................eee..eeeeeeeeeee..hhhhh....eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh...eeeeee.........eeeeeee................ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hnw B   2 PINIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPNGHITSLSVMRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSYYQDGEDAYAMKKVLEEKLEDDLESDLLED 227
                                    11        21        31        41        51    ||  80        90       100       110       120       130       140       150       160       170       180       190   ||  218         
                                                                                 56|                                                                                                                   194|              
                                                                                  76                                                                                                                    213
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HNW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HNW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HNW)

(-) Gene Ontology  (18, 24)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:760 - Asn A:761   [ RasMol ]  
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  4hnw
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  NAT1_YEAST | P12945
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  2.3.1.88
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARD1_YEAST | P07347: 4hnx 4hny 4xnh 4xpd 4y49
        NAT1_YEAST | P12945: 4hnx 4hny 4xnh 4xpd 4y49

(-) Related Entries Specified in the PDB File

4hnx 4hny