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(-) Description

Title :  APO N-TERMINAL ACETYLTRANSFERASE COMPLEX A
 
Authors :  J. L. Neubauer, R. M. Immormino, D. E. Dollins, S. T. Endo-Streeter, C. W Iv, J. D. York
Date :  21 Oct 12  (Deposition) - 26 Mar 14  (Release) - 26 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Tpr/Gnat, N-Terminal Acetyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Neubauer, T. Pham, R. M. Immormino, D. E. Dollins, S. T. Endo-Streeter, S. Li, C. W. Pemble Iv, J. D. York
The Protein Complex Nata Binds Inositol Hexakisphosphate An Exhibits Conformational Flexibility
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - N-TERMINAL ACETYLTRANSFERASE A COMPLEX SUBUNIT NAT1
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: 22B
    Expression System Strain: ROSETTA
    Expression System Taxid: 562
    Expression System Vector Type: PET
    Gene: NAT1, AAA1, YDL040C, D2720
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE S288C
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: NATA COMPLEX SUBUNIT NAT1, AMINO-TERMINAL, ALPHA-AMINO, ACETYLTRANSFERASE 1
 
Molecule 2 - N-TERMINAL ACETYLTRANSFERASE A COMPLEX CATALYTIC SUBUNIT ARD1
    Chains: B, D
    EC Number: 2.3.1.88
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: 30B
    Expression System Strain: ROSETTA
    Expression System Taxid: 562
    Expression System Vector Type: PET
    Gene: ARD1, YHR013C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE S288C
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: NATA COMPLEX SUBUNIT ARD1, ARREST-DEFECTIVE PROTEIN 1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2PG47Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2PG45Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2PG42Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:282 , GLN A:288 , LYS A:294 , ILE A:314 , THR A:317 , PHE A:318 , GLN B:182 , ASN C:792BINDING SITE FOR RESIDUE PG4 A 901
2AC2SOFTWARELEU A:165 , GLN A:169 , GLN A:177 , ASN A:180 , THR A:181BINDING SITE FOR RESIDUE PG4 A 902
3AC3SOFTWAREGLU A:245 , ASN A:271 , ASN A:274 , TYR A:277 , HOH A:1164 , HOH A:1379 , ARG B:6 , ARG B:7BINDING SITE FOR RESIDUE GOL A 903
4AC4SOFTWAREASN B:101 , ASN B:112 , GLY B:113 , HIS B:114 , TYR B:149 , VAL B:150 , SER B:151 , LEU B:152 , HIS B:153 , HOH B:473BINDING SITE FOR RESIDUE PG4 B 301
5AC5SOFTWARELYS A:609 , GLU A:610 , TYR A:853 , THR B:69 , THR B:73 , ASN B:74 , ASP B:75 , THR B:78BINDING SITE FOR RESIDUE PG4 B 302
6AC6SOFTWARELEU B:118 , SER B:119 , VAL B:120 , ALA B:161BINDING SITE FOR RESIDUE PG4 B 303
7AC7SOFTWARETYR C:817 , LYS C:831 , LEU C:854 , ASP C:858 , HOH C:1259BINDING SITE FOR RESIDUE PG4 C 901
8AC8SOFTWARELYS C:149 , GLN C:169 , GLN C:177 , ASN C:180 , THR C:181 , HOH C:1129BINDING SITE FOR RESIDUE PG4 C 902

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1B:15 -B:54
2D:15 -D:54

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Val A:823 -Pro A:824

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HNY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HNY)

(-) Exons   (0, 0)

(no "Exon" information available for 4HNY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:733
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhh.............hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh..hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hny A  54 VDSLALKGLDLYSVGEKDDAASYVANAIRASPICCHVLGIYMRNTKEYKESIKWFTAALNNGSTNKQIYRDLATLQSQIGDFKNALVSRKKYWEAFLGYRANWTSLAVAQDVNGERQQAINTLSQFEKLAEGKISDSEKYEHSECLMYKNDIMYKAASDNQDKLQNVLKHLNDIEPCVFDKFGLLERKATIYMKLGQLKDASIVYRTLIKRNPDNFKYYKLLEVSLGIQGDNKLKKALYGKLEQFYPRCEPPKFIPLTFLQDKEELSKKLREYVLPQLERGVPATFSNVKPLYQRRKSKVSPLLEKIVLDYLSGLDPTQDPIPFIWTNYYLSQHFLFLKDFPKAQEYIDAALDHTPTLVEFYILKARILKHLGLMDTAAGILEEGRQLDLQDRFINCKTVKYFLRANNIDKAVEVASLFTKNDDSVNGIKDLHLVEASWFIVEQAEAYYRLYLDRKKKLDDLASQIANDIKENQWLVRKYKGLALKRFNAIPKFYKQFEDDQLDFHSYCMRKGTPRAYLEMLEWGKALYTKPMYVRAMKEASKLYFQMHDDRLKRKSDSLDENDVFGEKLIETSTPMEDFATEFYNNYSMQVREDERDYILDFEFNYRIGKLALCFASLNKFAKRFGTTSGLFGSMAIVLLHATRPFDPILKKVVTKSLEKEYSEFDWLNFYQEKFGKNDINGLLFLYRYRDDVPIGSSNLKEMIISSLSPLEPHSQNEILQYYLYPYDVPDY 862
                                    63        73        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519   ||  540       550       560       570       580       590       600       610       620       630  ||   685       695       705       715       725       735       745       755    || 768       778    || 799       809       819       829       839       849       859   
                                                       82|                                                                                                                                                                                                                                                                                                                                                                                                                                               523|                                                                                               633|                                                                              760|                783|                                                                   
                                                        89                                                                                                                                                                                                                                                                                                                                                                                                                                                535                                                                                                679                                                                               764                 795                                                                   


Chain B from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhh....eeeeee..............hhhhhh...........eeeeeeeeeee......eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh....eeeeee.........eeeeeee.hhhhhhhhhhh............hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hny B   2 PINIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDSDEQDENDKLELTLDGTNDGRTIKGEKLVGYVLVKMNDDEPPNGHITSLSVMRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSYYQDGEDAYAMKKVLKLEELQISNFTHRRLKLEDDLESDLLEDIIKQGVND 235
                                    11        21        31        41        51        61        71        89        99   ||  114       124       134       144       154       164       174       184       194       204    || 219       229      
                                                                                                         80|           103|                                                                                                 209|                    
                                                                                                          89            109                                                                                                  215                    


Chain C from PDB  Type:PROTEIN  Length:759
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh...hhhhhhh...hhhhhhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hny C  25 LEALKLYEVDSLALKGLDLYSVGEKDDAASYVANAIRKIESASPICCHVLGIYMRNTKEYKESIKWFTAALNNGSTNKQIYRDLATLQSQIGDFKNALVSRKKYWEAFLGYRANWTSLAVAQDVNGERQQAINTLSQFEKLAEISDSEKYEHSECLMYKNDIMYKAASDNQDKLQNVLKHLNDIEPCVFDKFGLLERKATIYMKLGQLKDASIVYRTLIKRNPDNFKYYKLLEVSLGIQGDNKLKKALYGKLEQFYPRCEPPKFIPLTFLQDKEELSKKLREYVLPQLERGVPATFSNVKPLYQRRKSKVSPLLEKIVLDYLSGLDPTQDPIPFIWTNYYLSQHFLFLKDFPKAQEYIDAALDHTPTLVEFYILKARILKHLGLMDTAAGILEEGRQLDLQDRFINCKTVKYFLRANNIDKAVEVASLFTKNDDSVNGIKDLHLVEASWFIVEQAEAYYRLYLDRKKKLDDLASLKANDIKENQWLVRKYKGLALKRFNAIPKFYKQFEDDQLDFHSYCMRKGTPRAYLEMLEWGKALYTKPMYVRAMKEASKLYFQMHDDRLKRKSDSLDENSNDVFGEKLIETSTPMEDFATEFYNNYSMQVREDERDYILDFEFNYRIGKLALCFASLNKFAKRFGTTSGLFGSMAIVLLHATRNDTPFDPILKKVVTKSLEKEYSENFPLNEISNNSFDWLNFYQEKFGKNDINGLLFLYRYRDDVPIGSSNLKEMIISSLSPLEPHSQNEILQYYLYPYDVPDY 862
                                   |55        65        75        85|       97       107       117       127       137       147       157       167       177       187  ||   199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519     ||540       550       560       570       580       590       600       610       620       630   ||  683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853         
                                  32|                             85|                                                                                                   190|                                                                                                                                                                                                                                                                                                                                         525|                                                                                              634|                                                                                                                                                                                        
                                   54                              88                                                                                                    193                                                                                                                                                                                                                                                                                                                                          537                                                                                               678                                                                                                                                                                                        


Chain D from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhh.....hhhhhhhhhhh....eeeeee..........hhhhhhh..........eeeeeeeeeee..........eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh....eeeeee.........eeeeeee.hhhhhhhhhhh..........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hny D   2 PINIRRATINDIICMQNANLHNLPEMMKYYMYHILSWPEASFVATTTTLDCEDSDEDKLELTLDGTNDGRTIKGEKLVGYVLVKMNDDPDQQEPPNGHITSLSVMRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSYYQDGEDAYAMKKVLKLEELQISNFTHRKLEDDLESDLLEDIIKQGVNDIIVE 239
                                    11        21    ||  33        43        53     || 67        77  ||    95       105 ||    116       126       136       146       156       166       176       186       196       206||     223       233      
                                                   26|                            59|              80|               107|                                                                                               207|                        
                                                    29                             64               89                109                                                                                                215
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HNY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HNY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HNY)

(-) Gene Ontology  (18, 24)

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  4hny
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  ARD1_YEAST | P07347
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  NAT1_YEAST | P12945
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  2.3.1.88
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARD1_YEAST | P07347: 4hnw 4hnx 4xnh 4xpd 4y49
        NAT1_YEAST | P12945: 4hnw 4hnx 4xnh 4xpd 4y49

(-) Related Entries Specified in the PDB File

4hnw 4hnx