Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  C. CRESCENTUS MREB, DOUBLE FILAMENT, AMPPNP
 
Authors :  J. Lowe, F. Van Den Ent
Date :  19 Apr 14  (Deposition) - 11 Jun 14  (Release) - 25 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Protein, Bacterial Actin, Bacterial Cytoskeleton (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Van Den Ent, T. Izore, T. A. Bharat, C. M. Johnson, J. Lowe
Bacterial Actin Mreb Forms Antiparallel Double Filaments.
Elife V. 3 02634 2014
PubMed-ID: 24843005  |  Reference-DOI: 10.7554/ELIFE.02634

(-) Compounds

Molecule 1 - ROD SHAPE-DETERMINING PROTEIN MREB
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHIS17
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: C41
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 9-347
    Mutation: YES
    Organism Scientific: CAULOBACTER VIBRIOIDES
    Organism Taxid: 155892
    Synonym: MREB

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREANP A:1336 , HOH A:2001 , HOH A:2002 , HOH A:2086 , HOH A:2092BINDING SITE FOR RESIDUE MG A1335
2AC2SOFTWAREGLY A:18 , THR A:19 , ALA A:20 , ASN A:21 , GLU A:140 , GLY A:164 , GLY A:165 , GLY A:166 , THR A:167 , GLY A:188 , GLU A:213 , LYS A:216 , LYS A:217 , GLY A:294 , GLY A:295 , GLY A:296 , LEU A:298 , LEU A:299 , LEU A:321 , MG A:1335 , HOH A:2001 , HOH A:2003 , HOH A:2055 , HOH A:2084 , HOH A:2085 , HOH A:2086 , HOH A:2092 , HOH A:2103 , HOH A:2104 , HOH A:2115 , HOH A:2151 , HOH A:2152 , HOH A:2158BINDING SITE FOR RESIDUE ANP A1336
3AC3SOFTWAREANP B:1336 , HOH B:2002 , HOH B:2003 , HOH B:2079 , HOH B:2089BINDING SITE FOR RESIDUE MG B1335
4AC4SOFTWAREGLY B:18 , THR B:19 , ALA B:20 , ASN B:21 , GLU B:140 , GLY B:164 , GLY B:165 , GLY B:166 , THR B:167 , GLY B:188 , GLU B:213 , LYS B:216 , LYS B:217 , GLY B:294 , GLY B:295 , GLY B:296 , LEU B:298 , LEU B:299 , LEU B:321 , MG B:1335 , HOH B:2002 , HOH B:2003 , HOH B:2004 , HOH B:2051 , HOH B:2078 , HOH B:2079 , HOH B:2080 , HOH B:2089 , HOH B:2101 , HOH B:2103 , HOH B:2112 , HOH B:2153 , HOH B:2154 , HOH B:2159BINDING SITE FOR RESIDUE ANP B1336

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CZJ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asp B:227 -Gly B:228

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CZJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CZJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4CZJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:314
 aligned with A0A0H3C7V4_C | A0A0H3C7V4 from UniProtKB/TrEMBL  Length:347

    Alignment length:323
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331   
         A0A0H3C7V4_C    12 DIAIDLGTANTLIYQKGKGIVLNEPSVVALRNVGGRKVVHAVGIEAKQMLGRTPGHMEAIRPMRDGVIADFEVAEEMIKYFIRKVHNRKGFVNPKVIVCVPSGATAVERRAINDSCLNAGARRVGLIDEPMAAAIGAGLPIHEPTGSMVVDIGGGTTEVAVLSLSGIVYSRSVRVGGDKMDEAIISYMRRHHNLLIGETTAERIKKEIGTARAPADGEGLSIDVKGRDLMQGVPREVRISEKQAADALAEPVGQIVEAVKVALEATPPELASDIADKGIMLTGGGALLRGLDAEIRDHTGLPVTVADDPLSCVALGCGKVLEH 334
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...eeeeee...eeeeeee..eeeeee..eeeeeeehhhhhh........eeee..ee..ee.hhhhhhhhhhhhhhhhh------..eeeeee....hhhhhhhhhhhhhhhh..eeeeeehhhhhhhhh.........eeeeee....eeeeeee..eeeeeeee..hhhhhhhhhhhhhhhhhhee.hhhhhhhhhhhhh.....---...eeeeeeee.....eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhheeeehhhhhh.hhhhhhhhhhh..eee..hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4czj A  12 DIAIDLGTANTLIYQKGKGIVLNEPSVVALRNVGGRKVVHAVGIEAKQMLGRTPGHMEAIRPMRDGVIADFEVAEEMIKYFIRKVH------NPKVIVCVPSGATAVERRAINDSCLNAGARRVGLIDEPMAAAIGAGLPIHEPTGSMVVDIGGGTTEVAVLSLSGIVYSRSVRVGGDKMDEAIISYMRRHHNLLIGETTAERIKKEIGTARAP---EGLSIDVKGRDLMQGVPREVRISEKQAADALAEPVGQIVEAVKVALEATPPELASDIADKGIMLTGGGALLRGLDAEIRDHTGLPVTVADDPLSCVALGCGKVLEH 334
                                    21        31        41        51        61        71        81        91     |   -  |    111       121       131       141       151       161       171       181       191       201       211       221   |   231       241       251       261       271       281       291       301       311       321       331   
                                                                                                                97    104                                                                                                                      225 229                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:317
 aligned with A0A0H3C7V4_C | A0A0H3C7V4 from UniProtKB/TrEMBL  Length:347

    Alignment length:323
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331   
         A0A0H3C7V4_C    12 DIAIDLGTANTLIYQKGKGIVLNEPSVVALRNVGGRKVVHAVGIEAKQMLGRTPGHMEAIRPMRDGVIADFEVAEEMIKYFIRKVHNRKGFVNPKVIVCVPSGATAVERRAINDSCLNAGARRVGLIDEPMAAAIGAGLPIHEPTGSMVVDIGGGTTEVAVLSLSGIVYSRSVRVGGDKMDEAIISYMRRHHNLLIGETTAERIKKEIGTARAPADGEGLSIDVKGRDLMQGVPREVRISEKQAADALAEPVGQIVEAVKVALEATPPELASDIADKGIMLTGGGALLRGLDAEIRDHTGLPVTVADDPLSCVALGCGKVLEH 334
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...eeeeee...eeeeeee..eeeeee..eeeeeeehhhhhh........eeee..ee..ee.hhhhhhhhhhhhhhhh.------..eeeeee....hhhhhhhhhhhhhhh...eeeeeehhhhhhhhh.........eeeeee....eeeeeee..eeeeeeee..hhhhhhhhhhhhhhhhhhee.hhhhhhhhhhhhh...........eeeeeeee.....eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeehhhhhh.hhhhhhhhhhh..eee..hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4czj B  12 DIAIDLGTANTLIYQKGKGIVLNEPSVVALRNVGGRKVVHAVGIEAKQMLGRTPGHMEAIRPMRDGVIADFEVAEEMIKYFIRKVH------NPKVIVCVPSGATAVERRAINDSCLNAGARRVGLIDEPMAAAIGAGLPIHEPTGSMVVDIGGGTTEVAVLSLSGIVYSRSVRVGGDKMDEAIISYMRRHHNLLIGETTAERIKKEIGTARAPADGEGLSIDVKGRDLMQGVPREVRISEKQAADALAEPVGQIVEAVKVALEATPPELASDIADKGIMLTGGGALLRGLDAEIRDHTGLPVTVADDPLSCVALGCGKVLEH 334
                                    21        31        41        51        61        71        81        91     |   -  |    111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331   
                                                                                                                97    104
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CZJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CZJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CZJ)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4CZJ)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ANP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Asp B:227 - Gly B:228   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4czj
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  A0A0H3C7V4_C | A0A0H3C7V4
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  A0A0H3C7V4_C | A0A0H3C7V4
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0H3C7V4_C | A0A0H3C7V4: 4cze 4czf 4czg 4czh 4czi 4czk 4czl 4czm

(-) Related Entries Specified in the PDB File

4cze C. CRESCENTUS MREB, DOUBLE FILAMENT, EMPTY
4czf C. CRESCENTUS MREB, SINGLE FILAMENT, ADP
4czg C. CRESCENTUS MREB, SINGLE FILAMENT, ADP, A22 INHIBITOR
4czh C. CRESCENTUS MREB, SINGLE FILAMENT, ADP, MP265 INHIBITOR
4czi C. CRESCENTUS MREB, SINGLE FILAMENT, EMPTY
4czk C. CRESCENTUS MREB, SINGLE FILAMENT, AMPPNP, MP265 INHIBITOR
4czl C. CRESCENTUS MREB, MONOMERIC, ADP
4czm C. CRESCENTUS MREB, MONOMERIC, AMPPNP