4ASL - JenaLib

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Biol. Unit 1 - sites (Jmol Viewer)

Title :   STRUCTURE OF EPA1A IN COMPLEX WITH THE T-ANTIGEN (GAL-B1-3- GALNAC)

Authors :   M. Maestre-Reyna, R. Diderrich, M. S. Veelders, G. Eulenburg, V. Kalug S. Brueckner, P. Keller, S. Rupp, H. -U. Moesch, L. -O. Essen

Date :   02 May 12 (Deposition) - 17 Oct 12 (Release) - 14 Jun 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.24

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Cell Adhesion, Lectin, Tissue Invasion, Pathogenicity (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Maestre-Reyna, R. Diderrich, M. S. Veelders, G. Eulenburg, V. Kalugin, S. Bruckner, P. Keller, S. Rupp, H. Mosch, L. -O. Essen
Structural Basis For Promiscuity And Specificity During Candida Glabrata Invasion Of Host Epithelia.
Proc. Natl. Acad. Sci. Usa V. 109 16864 2012
PubMed-ID: 23035251 | Reference-DOI: 10.1073/PNAS.1207653109

Molecule 1 - EPA1P
	Atcc	:	2001
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Variant	:	SHUFFLE T7 EXPRESS (C3029)
	Expression System Vector	:	PET28A
	Expression System Vector Type	:	PLASMID
	Fragment	:	ADHESION DOMAIN (A DOMAIN), RESIDUES 31-271
	Organism Scientific	:	CANDIDA GLABRATA
	Organism Taxid	:	5478
	Strain	:	CBS138
	Synonym	:	EPITHELIAL ADHESIN 1

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 10)

No.	Name	Count	Type	Full Name
1	CA	1	Ligand/Ion	CALCIUM ION
2	GAL	1	Ligand/Ion	BETA-D-GALACTOSE
3	GOL	2	Ligand/Ion	GLYCEROL
4	NA	5	Ligand/Ion	SODIUM ION
5	NGA	1	Ligand/Ion	N-ACETYL-D-GALACTOSAMINE

Biological Unit 1 (3, 8)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	GAL	2	Ligand/Ion	BETA-D-GALACTOSE
3	GOL	4	Ligand/Ion	GLYCEROL
4	NA	-1	Ligand/Ion	SODIUM ION
5	NGA	2	Ligand/Ion	N-ACETYL-D-GALACTOSAMINE

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:164 , ASP A:165 , ASN A:225 , GLU A:227 , ASP A:229 , GAL A:302	binding site for residue CA A 301
2	AC2	SOFTWARE	ASP A:69 , HOH A:579 , HOH A:648	binding site for residue NA A 304
3	AC3	SOFTWARE	LYS A:204 , GLU A:206 , HOH A:737	binding site for residue NA A 305
4	AC4	SOFTWARE	GLU A:64 , TYR A:66 , TYR A:93 , GOL A:309 , HOH A:517 , HOH A:638	binding site for residue NA A 306
5	AC5	SOFTWARE	ASP A:53 , GLU A:239 , HOH A:689	binding site for residue NA A 307
6	AC6	SOFTWARE	VAL A:153 , PHE A:236 , THR A:238 , ASN A:241 , VAL A:245 , TYR A:251 , HOH A:409 , HOH A:485 , HOH A:499 , HOH A:549	binding site for residue GOL A 308
7	AC7	SOFTWARE	TYR A:66 , LYS A:94 , LEU A:98 , NA A:306 , HOH A:414 , HOH A:415 , HOH A:638	binding site for residue GOL A 309
8	AC8	SOFTWARE	ASN A:243 , HOH A:598	binding site for residue NA A 310
9	AC9	SOFTWARE	TYR A:76 , GLY A:118 , ASP A:164 , ASP A:165 , TRP A:198 , ARG A:226 , GLU A:227 , TYR A:228 , ASP A:229 , CA A:301 , HOH A:406 , HOH A:425 , HOH A:534 , HOH A:548 , HOH A:575 , HOH A:602 , HOH A:605	binding site for Poly-Saccharide residues GAL A 302 through NGA A 303

Asymmetric Unit

No.	Residues
1	A:50	-	A:179
2	A:78	-	A:119
3	A:180	-	A:262

Asymmetric Unit

No.	Residues
1	Tyr A:76	-	Pro A:77
2	Asp A:164	-	Asp A:165

(no "SAP(SNP)/Variant" information available for 4ASL)

(no "PROSITE Motif" information available for 4ASL)

(no "Exon" information available for 4ASL)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:229
 aligned with Q6FUW5_CANGA | Q6FUW5 from UniProtKB/TrEMBL  Length:1034

    Alignment length:229
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258         
         Q6FUW5_CANGA    39 ASKDPTTFPLGCSPDITTPKKGLSMELYSYDFRKKGSYPCWDAAYLDPNYPRTGYKSHRLLAKVDGVTGNINFYYHATKGCTPQLGHLPASYNYPKPLTMTNFTMLLYGYFRPKVTGFHTFTISADDLLFVNFGAGNAFDCCRRDSSADHFGNYQAYAIWGSKTAKDELTVHLDAGVYYPIRLFYNNREYDGALSFTFKTESNENTVSDFSEYFFSLDDTEEGCPGLIS 267
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................ee.eeeeeee.............hhhhh.....hhhhhh.eeeeeeee.....eee.........ee..hhhhh....ee...eeeeeeeee.....eeeeeeeeee.eeeeee.........hhhhhh.......eeee......eeeeeeee.....eeeeeeeee....eeeeeeeee.............eee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4asl A  39 ASKDPTTFPLGCSPDITTPKKGLSMELYSYDFRKKGSYPCWDAAYLDPNYPRTGYKSHRLLAKVDGVTGNINFYYHATKGCTPQLGHLPASYNYPKPLTMTNFTMLLYGYFRPKVTGFHTFTISADDLLFVNFGAGNAFDCCRRDSSADHFGNYQAYAIWGSKTAKDELTVHLDAGVYYPIRLFYNNREYDGALSFTFKTESNENTVSDFSEYFFSLDDTEEGCPGLIS 267
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258

Chain A from PDB  Type:PROTEIN  Length:229
 aligned with Q6VBJ0_CANGB | Q6VBJ0 from UniProtKB/TrEMBL  Length:1034

    Alignment length:229
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258         
         Q6VBJ0_CANGB    39 ASKDPTTFPLGCSPDITTPKKGLSMELYSYDFRKKGSYPCWDAAYLDPNYPRTGYKSHRLLAKVDGVTGNINFYYHATKGCTPQLGHLPASYNYPKPLTMTNFTMLLYGYFRPKVTGFHTFTISADDLLFVNFGAGNAFDCCRRDSSADHFGNYQAYAIWGSKTAKDELTVHLDAGVYYPIRLFYNNREYDGALSFTFKTESNENTVSDFSEYFFSLDDTEEGCPGLIS 267
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................ee.eeeeeee.............hhhhh.....hhhhhh.eeeeeeee.....eee.........ee..hhhhh....ee...eeeeeeeee.....eeeeeeeeee.eeeeee.........hhhhhh.......eeee......eeeeeeee.....eeeeeeeee....eeeeeeeee.............eee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4asl A  39 ASKDPTTFPLGCSPDITTPKKGLSMELYSYDFRKKGSYPCWDAAYLDPNYPRTGYKSHRLLAKVDGVTGNINFYYHATKGCTPQLGHLPASYNYPKPLTMTNFTMLLYGYFRPKVTGFHTFTISADDLLFVNFGAGNAFDCCRRDSSADHFGNYQAYAIWGSKTAKDELTVHLDAGVYYPIRLFYNNREYDGALSFTFKTESNENTVSDFSEYFFSLDDTEEGCPGLIS 267
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4ASL)

(no "CATH Domain" information available for 4ASL)

(no "Pfam Domain" information available for 4ASL)

Asymmetric Unit(hide GO term definitions)

Chain A (Q6VBJ0_CANGB | Q6VBJ0)

molecular function
	GO:0046872		metal ion binding		Interacting selectively and non-covalently with any metal ion.

Chain A (Q6FUW5_CANGA | Q6FUW5)

molecular function
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0050839	cell adhesion molecule binding	Interacting selectively and non-covalently with a cell adhesion molecule.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0044406	adhesion of symbiont to host	The attachment of a symbiont to its host via adhesion molecules, general stickiness etc., either directly or indirectly. The host is defined as the larger of the organisms involved in a symbiotic interaction.
cellular component
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0009277	fungal-type cell wall	A rigid yet dynamic structure surrounding the plasma membrane that affords protection from stresses and contributes to cell morphogenesis, consisting of extensively cross-linked glycoproteins and carbohydrates. The glycoproteins may be modified with N- or O-linked carbohydrates, or glycosylphosphatidylinositol (GPI) anchors; the polysaccharides are primarily branched glucans, including beta-linked and alpha-linked glucans, and may also include chitin and other carbohydrate polymers, but not cellulose or pectin. Enzymes involved in cell wall biosynthesis are also found in the cell wall. Note that some forms of fungi develop a capsule outside of the cell wall under certain circumstances; this is considered a separate structure.

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	Cis Peptide Bonds
		Asp A:164 - Asp A:165	[ RasMol ]
		Tyr A:76 - Pro A:77	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	Q6FUW5_CANGA \| Q6FUW5	:	4d3w
	Q6VBJ0_CANGB \| Q6VBJ0	:	4a3x 4af9 4afa 4afb 4afc

4a3x	STRUCTURE OF THE N-TERMINAL DOMAIN OF THE EPA1 ADHESIN (EPA1-NP) FROM THE PATHOGENIC YEAST CANDIDA GLABRATA, IN COMPLEX WITH CALCIUM AND LACTOSE
4af9	CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 1 A DOMAIN ( EPA1A) FROM CANDIDA GLABRATA IN COMPLEX WITH GALB1- 3GLC
4afa	CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 2 A DOMAIN (EPA1TO2A) FROM CANDIDA GLABRATA IN COMPLEX WITH GLYCEROL
4afb	CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 3 A DOMAIN (EPA1TO3A) FROM CANDIDA GLABRATA IN COMPLEX WITH GLYCEROL
4afc	CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 6 A DOMAIN (EPA1TO6A) FROM CANDIDA GLABRATA IN COMPLEX WITH GALB1-3GLC

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 10)

Sites (9, 9)

SS Bonds (3, 3)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 7)

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