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(-) Description

Title :  CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 3 A DOMAIN (EPA1TO3A) FROM CANDIDA GLABRATA IN COMPLEX WITH GLYCEROL
 
Authors :  M. Maestre-Reyna, R. Diderrich, M. S. Veelders, G. Eulenburg, V. Kalug S. Brueckner, P. Keller, S. Rupp, H. -U. Moesch, L. -O. Essen
Date :  18 Jan 12  (Deposition) - 17 Oct 12  (Release) - 31 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Cell Adhesion, Lectin, Tissue Invasion, Pathogenicity (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Maestre-Reyna, R. Diderrich, M. S. Veelders, G. Eulenburg, V. Kalugin, S. Bruckner, P. Keller, S. Rupp, H. Mosch, L. Essen
Structural Basis For Promiscuity And Specificity During Candida Glabrata Invasion Of Host Epithelia.
Proc. Natl. Acad. Sci. Usa V. 109 16864 2012
PubMed-ID: 23035251  |  Reference-DOI: 10.1073/PNAS.1207653109

(-) Compounds

Molecule 1 - EPA1P
    Atcc: 2001
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: SHUFFLE T7 EXPRESS (C3029)
    Expression System Taxid: 562
    Fragment: ADHESION DOMAIN (A DOMAIN), RESIDUES 31-271
    Mutation: YES
    Organism Scientific: CANDIDA GLABRATA
    Organism Taxid: 5478
    Other Details: SUB-TYPE SWITCHED EPA1A VARIANT WHICH EMULATES THE BINDING POCKET OF EPA3A
    Strain: CBS138
    Synonym: EPITHELIAL ADHESIN 1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2GOL4Ligand/IonGLYCEROL
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL8Ligand/IonGLYCEROL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:164 , ASP A:165 , ASN A:225 , GLY A:227 , ASP A:229 , GOL A:1268BINDING SITE FOR RESIDUE CA A1267
2AC2SOFTWAREASP A:164 , ASP A:165 , TRP A:198 , GLY A:227 , LYS A:228 , ASP A:229 , CA A:1267 , HOH A:2129BINDING SITE FOR RESIDUE GOL A1268
3AC3SOFTWARETHR A:238 , ASN A:241 , TYR A:251 , HOH A:2101BINDING SITE FOR RESIDUE GOL A1269
4AC4SOFTWAREPHE A:156 , THR A:158 , LYS A:237 , THR A:238 , HOH A:2134 , HOH A:2162BINDING SITE FOR RESIDUE GOL A1270
5AC5SOFTWARETYR A:112 , HIS A:125 , ILE A:266 , HOH A:2013 , HOH A:2074 , HOH A:2090BINDING SITE FOR RESIDUE GOL A1271

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:50 -A:179
2A:78 -A:119
3A:180 -A:262

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Tyr A:76 -Pro A:77
2Asp A:164 -Asp A:165

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4AFB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4AFB)

(-) Exons   (0, 0)

(no "Exon" information available for 4AFB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:228
 aligned with Q6VBJ0_CANGB | Q6VBJ0 from UniProtKB/TrEMBL  Length:1034

    Alignment length:228
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259        
         Q6VBJ0_CANGB    40 SKDPTTFPLGCSPDITTPKKGLSMELYSYDFRKKGSYPCWDAAYLDPNYPRTGYKSHRLLAKVDGVTGNINFYYHATKGCTPQLGHLPASYNYPKPLTMTNFTMLLYGYFRPKVTGFHTFTISADDLLFVNFGAGNAFDCCRRDSSADHFGNYQAYAIWGSKTAKDELTVHLDAGVYYPIRLFYNNREYDGALSFTFKTESNENTVSDFSEYFFSLDDTEEGCPGLIS 267
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..................ee.eeeeeee.............hhhhh.....hhhhhh.eeeeeeee.....eee.........ee..hhhhh....ee...eeeeeeeee.....eeeeeeeeee.eeeeee.........hhhhhh.......eeee......eeeeeeee.....eeeeeeeee....eeeeeeeee.............eee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4afb A  40 SKDPTTFPLGCSPDITTPKKGLSMELYSYDFRKKGSYPCWDAAYLDPNYPRTGYKSHRLLAKVDGVTGNINFYYHATKGCTPQLGHLPASYNYPKPLTMTNFTMLLYGYFRPKVTGFHTFTISADDLLFVNFGAGNAFDCCRRDSSADHFGNYQAYAIWGSKTAKDELTVHLDAGVYYPIRLFYNNIGKDGALSFTFKTESNENTVSDFSEYFFSLDDTEEGCPGLIS 267
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4AFB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4AFB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4AFB)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q6VBJ0_CANGB | Q6VBJ0)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q6VBJ0_CANGB | Q6VBJ0: 4asl
UniProtKB/TrEMBL
        Q6VBJ0_CANGB | Q6VBJ0: 4a3x 4af9 4afa 4afc

(-) Related Entries Specified in the PDB File

4a3x STRUCTURE OF THE N-TERMINAL DOMAIN OF THE EPA1 ADHESIN (EPA1-NP) FROM THE PATHOGENIC YEAST CANDIDA GLABRATA, IN COMPLEX WITH CALCIUM AND LACTOSE
4af9 CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 1 A DOMAIN ( EPA1A) FROM CANDIDA GLABRATA IN COMPLEX WITH GALB1- 3GLC
4afa CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 2 A DOMAIN (EPA1TO2A) FROM CANDIDA GLABRATA IN COMPLEX WITH GLYCEROL
4afc CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 6 A DOMAIN (EPA1TO6A) FROM CANDIDA GLABRATA IN COMPLEX WITH GALB1-3GLC
4asl STRUCTURE OF EPA1A IN COMPLEX WITH THE T-ANTIGEN ( GAL-B1-3-GALNAC)