4AF9 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 1 A DOMAIN (EPA1A) FROM CANDIDA GLABRATA IN COMPLEX WITH GALB1-3GLC

Authors :   M. Maestre-Reyna, R. Diderrich, M. S. Veelders, G. Eulenburg, V. Kalug S. Brueckner, P. Keller, S. Rupp, H. -U. Moesch, L. -O. Essen

Date :   18 Jan 12 (Deposition) - 17 Oct 12 (Release) - 31 Oct 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Cell Adhesion, Lectin, Tissue Invasion, Pathogenicity (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Maestre-Reyna, R. Diderrich, M. S. Veelders, G. Eulenburg, V. Kalugin, S. Bruckner, P. Keller, S. Rupp, H. Mosch, L. Essen
Structural Basis For Promiscuity And Specificity During Candida Glabrata Invasion Of Host Epithelia.
Proc. Natl. Acad. Sci. Usa V. 109 16864 2012
PubMed-ID: 23035251 | Reference-DOI: 10.1073/PNAS.1207653109

Molecule 1 - EPA1P
	Atcc	:	2001
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	B
	Expression System Taxid	:	37762
	Expression System Variant	:	SHUFFLE T7 EXPRESS (C3029)
	Expression System Vector Type	:	PLASMID
	Fragment	:	ADHESION DOMAIN (A DOMAIN), RESIDUES 31-271
	Organism Scientific	:	CANDIDA GLABRATA
	Organism Taxid	:	5478
	Strain	:	CBS138
	Synonym	:	EPITHELIAL ADHESIN 1

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 8)

No.	Name	Count	Type	Full Name
1	BGC	1	Ligand/Ion	BETA-D-GLUCOSE
2	CA	1	Ligand/Ion	CALCIUM ION
3	GAL	1	Ligand/Ion	BETA-D-GALACTOSE
4	GLC	1	Ligand/Ion	ALPHA-D-GLUCOSE
5	GOL	3	Ligand/Ion	GLYCEROL
6	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 1 (5, 14)

No.	Name	Count	Type	Full Name
1	BGC	2	Ligand/Ion	BETA-D-GLUCOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	GAL	2	Ligand/Ion	BETA-D-GALACTOSE
4	GLC	2	Ligand/Ion	ALPHA-D-GLUCOSE
5	GOL	6	Ligand/Ion	GLYCEROL
6	PEG	2	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:164 , ASP A:165 , ASN A:225 , GLU A:227 , ASP A:229 , GAL A:1271	BINDING SITE FOR RESIDUE CA A1267
2	AC2	SOFTWARE	PHE A:236 , THR A:238 , ASN A:241 , VAL A:245 , TYR A:251 , HOH A:2172	BINDING SITE FOR RESIDUE GOL A1268
3	AC3	SOFTWARE	PHE A:156 , THR A:158 , LYS A:237 , THR A:238 , HOH A:2178 , HOH A:2227 , HOH A:2230 , HOH A:2265 , HOH A:2266	BINDING SITE FOR RESIDUE GOL A1269
4	AC4	SOFTWARE	PRO A:52 , PHE A:111 , TYR A:112 , HIS A:125 , PRO A:127 , MET A:138 , LEU A:265 , ILE A:266 , HOH A:2016 , HOH A:2267	BINDING SITE FOR RESIDUE PEG A1270
5	AC5	SOFTWARE	ARG A:181 , ASP A:257 , THR A:258 , HOH A:2166 , HOH A:2257 , HOH A:2271	BINDING SITE FOR RESIDUE GOL A1274
6	AC6	SOFTWARE	TYR A:76 , ASP A:164 , ASP A:165 , TRP A:198 , ARG A:226 , GLU A:227 , TYR A:228 , ASP A:229 , CA A:1267 , HOH A:2067 , HOH A:2225 , HOH A:2268 , HOH A:2269 , HOH A:2270	BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 1271 TO 1273

Asymmetric Unit

No.	Residues
1	A:50	-	A:179
2	A:78	-	A:119
3	A:180	-	A:262

Asymmetric Unit

No.	Residues
1	Tyr A:76	-	Pro A:77
2	Asp A:164	-	Asp A:165

(no "SAP(SNP)/Variant" information available for 4AF9)

(no "PROSITE Motif" information available for 4AF9)

(no "Exon" information available for 4AF9)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:229
 aligned with Q6VBJ0_CANGB | Q6VBJ0 from UniProtKB/TrEMBL  Length:1034

    Alignment length:229
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258         
         Q6VBJ0_CANGB    39 ASKDPTTFPLGCSPDITTPKKGLSMELYSYDFRKKGSYPCWDAAYLDPNYPRTGYKSHRLLAKVDGVTGNINFYYHATKGCTPQLGHLPASYNYPKPLTMTNFTMLLYGYFRPKVTGFHTFTISADDLLFVNFGAGNAFDCCRRDSSADHFGNYQAYAIWGSKTAKDELTVHLDAGVYYPIRLFYNNREYDGALSFTFKTESNENTVSDFSEYFFSLDDTEEGCPGLIS 267
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................ee.eeeeeee............hhhhhh.....hhhhhh.eeeeeeee.....eee.........ee..hhhhh....ee...eeeeeeeee.....eeeeeeeeee.eeeeee.........hhhhhhhhh....eeee......eeeeeeee.....eeeeeeeee....eeeeeeeee.............eee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4af9 A  39 ASKDPTTFPLGCSPDITTPKKGLSMELYSYDFRKKGSYPCWDAAYLDPNYPRTGYKSHRLLAKVDGVTGNINFYYHATKGCTPQLGHLPASYNYPKPLTMTNFTMLLYGYFRPKVTGFHTFTISADDLLFVNFGAGNAFDCCRRDSSADHFGNYQAYAIWGSKTAKDELTVHLDAGVYYPIRLFYNNREYDGALSFTFKTESNENTVSDFSEYFFSLDDTEEGCPGLIS 267
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4AF9)

(no "CATH Domain" information available for 4AF9)

(no "Pfam Domain" information available for 4AF9)

Asymmetric Unit(hide GO term definitions)

Chain A (Q6VBJ0_CANGB | Q6VBJ0)

molecular function
	GO:0046872		metal ion binding		Interacting selectively and non-covalently with any metal ion.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		BGC	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GAL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GLC	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GOL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PEG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Asp A:164 - Asp A:165	[ RasMol ]
		Tyr A:76 - Pro A:77	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	4af9
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	Q6VBJ0_CANGB \| Q6VBJ0
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	Q6VBJ0_CANGB \| Q6VBJ0
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	Q6VBJ0_CANGB \| Q6VBJ0	:	4asl
UniProtKB/TrEMBL
	Q6VBJ0_CANGB \| Q6VBJ0	:	4a3x 4afa 4afb 4afc

4a3x	STRUCTURE OF THE N-TERMINAL DOMAIN OF THE EPA1 ADHESIN (EPA1-NP) FROM THE PATHOGENIC YEAST CANDIDA GLABRATA, IN COMPLEX WITH CALCIUM AND LACTOSE
4afa	CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 2 A DOMAIN (EPA1TO2A) FROM CANDIDA GLABRATA IN COMPLEX WITH GLYCEROL
4afb	CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 3 A DOMAIN (EPA1TO3A) FROM CANDIDA GLABRATA IN COMPLEX WITH GLYCEROL
4afc	CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 6 A DOMAIN (EPA1TO6A) FROM CANDIDA GLABRATA IN COMPLEX WITH GALB1-3GLC
4asl	STRUCTURE OF EPA1A IN COMPLEX WITH THE T-ANTIGEN ( GAL-B1-3-GALNAC)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 8)

Sites (6, 6)

SS Bonds (3, 3)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File