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(-) Description

Title :  CRYSTAL STRUCTURE OF ADP-RIBOSYL CYCLASE COMPLEXED WITH ARA-2'F-ADP-RIBOSE AT 2.3 ANGSTROM
 
Authors :  M. Kotaka, R. Graeff, L. H. Zhang, H. C. Lee, Q. Hao
Date :  03 Aug 11  (Deposition) - 30 Nov 11  (Release) - 25 Jan 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Hydrolase, Cd38 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kotaka, R. Graeff, Z. Chen, L. H. Zhang, H. C. Lee, Q. Hao
Structural Studies Of Intermediates Along The Cyclization Pathway Of Aplysia Adp-Ribosyl Cyclase.
J. Mol. Biol. V. 415 514 2012
PubMed-ID: 22138343  |  Reference-DOI: 10.1016/J.JMB.2011.11.022

(-) Compounds

Molecule 1 - ADP-RIBOSYL CYCLASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 3.2.2.5
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Plasmid: PPICZALPHAA
    Expression System Strain: X-33
    Expression System Taxid: 4922
    Organism Common: CALIFORNIA SEA HARE
    Organism Scientific: APLYSIA CALIFORNICA
    Organism Taxid: 6500
    Synonym: ADRC, NAD GLYCOHYDROLASE, NAD(+) NUCLEOSIDASE, NADASE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1AVU8Ligand/Ion[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3R,4R)-4-FLUORO-3-HYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1AVU2Ligand/Ion[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3R,4R)-4-FLUORO-3-HYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1AVU2Ligand/Ion[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3R,4R)-4-FLUORO-3-HYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1AVU2Ligand/Ion[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3R,4R)-4-FLUORO-3-HYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1AVU2Ligand/Ion[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3R,4R)-4-FLUORO-3-HYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:76 , TRP A:77 , SER A:78 , GLY A:79 , LEU A:97 , GLU A:98 , ASN A:107 , TRP A:140 , SER A:144 , PHE A:174 , PHE A:175 , GLU A:179BINDING SITE FOR RESIDUE AVU A 301
2AC2SOFTWAREPHE B:76 , TRP B:77 , SER B:78 , GLY B:79 , LEU B:97 , GLU B:98 , ASN B:107 , TRP B:140 , SER B:144 , SER B:173 , PHE B:174 , PHE B:175 , GLU B:179 , HOH B:2035BINDING SITE FOR RESIDUE AVU B 301
3AC3SOFTWAREPHE C:76 , TRP C:77 , SER C:78 , GLY C:79 , GLU C:98 , ASN C:107 , TRP C:140 , SER C:144 , ARG C:170 , SER C:173 , PHE C:174 , PHE C:175 , GLU C:179 , HOH C:2020BINDING SITE FOR RESIDUE AVU C 301
4AC4SOFTWAREPHE D:76 , TRP D:77 , SER D:78 , GLY D:79 , LEU D:97 , GLU D:98 , TRP D:140 , SER D:144 , ARG D:170 , PHE D:174 , PHE D:175 , GLU D:179 , HOH D:2026 , HOH D:2033 , HOH D:2048BINDING SITE FOR RESIDUE AVU D 301
5AC5SOFTWAREPHE E:76 , TRP E:77 , SER E:78 , GLY E:79 , LEU E:97 , GLU E:98 , TRP E:140 , SER E:144 , ARG E:170 , SER E:173 , PHE E:174 , PHE E:175 , GLU E:179BINDING SITE FOR RESIDUE AVU E 301
6AC6SOFTWAREPHE F:76 , TRP F:77 , SER F:78 , GLY F:79 , GLU F:98 , TRP F:140 , SER F:144 , ARG F:170 , SER F:173 , PHE F:174 , PHE F:175 , GLU F:179BINDING SITE FOR RESIDUE AVU F 301
7AC7SOFTWAREPHE G:76 , TRP G:77 , SER G:78 , GLY G:79 , LEU G:97 , GLU G:98 , TRP G:140 , SER G:144 , ARG G:170 , SER G:173 , PHE G:174 , PHE G:175 , GLU G:179BINDING SITE FOR RESIDUE AVU G 301
8AC8SOFTWAREPHE H:76 , TRP H:77 , SER H:78 , GLY H:79 , LEU H:97 , GLU H:98 , ASN H:107 , TRP H:140 , SER H:144 , ARG H:170 , SER H:173 , PHE H:174 , PHE H:175 , GLU H:179 , HOH H:2029BINDING SITE FOR RESIDUE AVU H 301

(-) SS Bonds  (40, 40)

Asymmetric Unit
No.Residues
1A:15 -A:34
2A:51 -A:131
3A:112 -A:125
4A:206 -A:227
5A:239 -A:248
6B:15 -B:34
7B:51 -B:131
8B:112 -B:125
9B:206 -B:227
10B:239 -B:248
11C:15 -C:34
12C:51 -C:131
13C:112 -C:125
14C:206 -C:227
15C:239 -C:248
16D:15 -D:34
17D:51 -D:131
18D:112 -D:125
19D:206 -D:227
20D:239 -D:248
21E:15 -E:34
22E:51 -E:131
23E:112 -E:125
24E:206 -E:227
25E:239 -E:248
26F:15 -F:34
27F:51 -F:131
28F:112 -F:125
29F:206 -F:227
30F:239 -F:248
31G:15 -G:34
32G:51 -G:131
33G:112 -G:125
34G:206 -G:227
35G:239 -G:248
36H:15 -H:34
37H:51 -H:131
38H:112 -H:125
39H:206 -H:227
40H:239 -H:248

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Asn A:117 -Pro A:118
2Asn B:117 -Pro B:118
3Asn C:117 -Pro C:118
4Asn D:117 -Pro D:118
5Asn E:117 -Pro E:118
6Asn F:117 -Pro F:118
7Asn G:117 -Pro G:118
8Asn H:117 -Pro H:118

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ZWV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ZWV)

(-) Exons   (0, 0)

(no "Exon" information available for 3ZWV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:253
 aligned with NADA_APLCA | P29241 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:253
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274   
           NADA_APLCA    25 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLAKR 277
               SCOP domains d3zwva_ A: automated matches                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh...........hhhhhhhhh........eeee.hhhhhhhhhh......hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee............hhhhhhhhhhh...eeeeeeeee............hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zwv A   1 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLAKR 253
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250   


Chain B from PDB  Type:PROTEIN  Length:252
 aligned with NADA_APLCA | P29241 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:252
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274  
           NADA_APLCA    25 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLAK 276
               SCOP domains d3zwvb_ B: automated matches                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh...........hhhhhhhhh.......eeeee.hhhhhhhhhh......hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee............hhhhhhhhhhh...eeeeeeeee............hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh...hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zwv B   1 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLAK 252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  


Chain C from PDB  Type:PROTEIN  Length:252
 aligned with NADA_APLCA | P29241 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:252
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274  
           NADA_APLCA    25 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLAK 276
               SCOP domains d3zwvc_ C: automated matches                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh...........hhhhhhhhh.......eeeee.hhhhhhhhhh......hhhhhhhhhhhh........................hhhhhhhhhhhhhhhhhhh..eeeeeeee............hhhhhhhhhhh...eeeeeeeee.............hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh...hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zwv C   1 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLAK 252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  


Chain D from PDB  Type:PROTEIN  Length:252
 aligned with NADA_APLCA | P29241 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:252
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272  
           NADA_APLCA    23 EAIVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRL 274
               SCOP domains d3zwvd_ D: automated matches                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh...........hhhhhhhhh.......eeeee.hhhhhhhhhh......hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee............hhhhhhhhhhh...eeeeeeeee............hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh...hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zwv D  -1 AAIVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRL 250
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248  


Chain E from PDB  Type:PROTEIN  Length:252
 aligned with NADA_APLCA | P29241 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:252
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274  
           NADA_APLCA    25 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLAK 276
               SCOP domains d3zwve_ E: automated matches                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh..hhhhh....hhhhhhhhh........eeee.hhhhhhhhhh......hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee............hhhhhhhhhhh...eeeeeeeee............hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zwv E   1 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLAK 252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  


Chain F from PDB  Type:PROTEIN  Length:252
 aligned with NADA_APLCA | P29241 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:252
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274  
           NADA_APLCA    25 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLAK 276
               SCOP domains d3zwvf_ F: automated matches                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh...........hhhhhhhhh.......eeeee.hhhhhhhhhh......hhhhhhhhhhhh........................hhhhhhhhhhhhhhhhhhhh.eeeeeeee............hhhhhhh.......eeeeeeeee.............hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zwv F   1 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLAK 252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  


Chain G from PDB  Type:PROTEIN  Length:252
 aligned with NADA_APLCA | P29241 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:252
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274  
           NADA_APLCA    25 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLAK 276
               SCOP domains d3zwvg_ G: automated matches                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhh..............hhhhhhhhh.......eeeee.hhhhhhhhhh......hhhhhhhhhhhh....ee......ee.....hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee............hhhhhhhhhhh...eeeeeeeee.............hhhhhhhhhhhh...eeeeee.hhhhhhhhhhhh..hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zwv G   1 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLAK 252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  


Chain H from PDB  Type:PROTEIN  Length:252
 aligned with NADA_APLCA | P29241 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:252
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274  
           NADA_APLCA    25 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLAK 276
               SCOP domains d3zwvh_ H: automated matches                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh...........hhhhhhhhh.......eeeee.hhhhhhhhhh......hhhhhhhhhhhh...............................hhhhhhhhhhhh..eeeeeeee............hhhhhhhhhhh...eeeeeeeee.............hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zwv H   1 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLAK 252
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(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZWV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZWV)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (NADA_APLCA | P29241)
molecular function
    GO:0050135    NAD(P)+ nucleosidase activity    Catalysis of the reaction: NAD(P)+ + H2O = ADP-ribose(P) + nicotinamide.
    GO:0003953    NAD+ nucleosidase activity    Catalysis of the reaction: NAD+ + H2O = nicotinamide + ADP-ribose.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0007338    single fertilization    The union of male and female gametes to form a zygote.
cellular component
    GO:0031410    cytoplasmic vesicle    A vesicle found in the cytoplasm of a cell.

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  3zwv
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  NADA_APLCA | P29241
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  3.2.2.5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NADA_APLCA | P29241: 1lbe 1r0s 1r12 1r15 1r16 3i9j 3i9k 3i9l 3i9o 3zwm 3zwn 3zwo 3zwp 3zww 3zwx 3zwy

(-) Related Entries Specified in the PDB File

1lbe APLYSIA ADP RIBOSYL CYCLASE
1r0s CRYSTAL STRUCTURE OF ADP-RIBOSYL CYCLASE GLU179ALA MUTANT
1r12 NATIVE APLYSIA ADP RIBOSYL CYCLASE
1r15 APLYSIA ADP RIBOSYL CYCLASE WITH BOUND NICOTINAMIDE AND R5P
1r16 APLYSIA ADP RIBOSYL CYCLASE WITH BOUND PYRIDYLCARBINOL ANDR5P
3zwm CRYSTAL STRUCTURE OF ADP RIBOSYL CYCLASE COMPLEXED WITH SUBSTRATE NAD AND PRODUCT CADPR
3zwn CRYSTAL STRUCTURE OF APLYSIA CYCLASE COMPLEXED WITH SUBSTRATE NGD AND PRODUCT CGDPR
3zwo CRYSTAL STRUCTURE OF ADP RIBOSYL CYCLASE COMPLEXED WITH REACTION INTERMEDIATE
3zwp CRYSTAL STRUCTURE OF ADP RIBOSYL CYCLASE COMPLEXED WITH ARA-2'F-ADP-RIBOSE AT 2.1 ANGSTROM
3zww CRYSTAL STRUCTURE OF ADP-RIBOSYL CYCLASE COMPLEXED WITH ARA-2'F-ADP-RIBOSE AT 2.3 ANGSTROM
3zwx CRYSTAL STRUCTURE OF ADP-RIBOSYL CYCLASE COMPLEXED WITH 8-BROMO-ADP-RIBOSE
3zwy CRYSTAL STRUCTURE OF ADP-RIBOSYL CYCLASE COMPLEXED WITH 8-BROMO-ADP-RIBOSE AND CYCLIC 8-BROMO-CYCLIC-ADP- RIBOSE