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(-) Description

Title :  CRYSTAL STRUCTURE OF ADP RIBOSYL CYCLASE COMPLEXED WITH REACTION INTERMEDIATE
 
Authors :  M. Kotaka, R. Graeff, L. H. Zhang, H. C. Lee, Q. Hao
Date :  02 Aug 11  (Deposition) - 30 Nov 11  (Release) - 25 Jan 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  E,H  (1x)
Biol. Unit 2:  B,G  (1x)
Biol. Unit 3:  A,D  (1x)
Biol. Unit 4:  C,F  (1x)
Keywords :  Hydrolase, Cd38, Hydrolysis, Nad, Substrate Specificity (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kotaka, R. Graeff, Z. Chen, L. H. Zhang, H. C. Lee, Q. Hao
Structural Studies Of Intermediates Along The Cyclization Pathway Of Aplysia Adp-Ribosyl Cyclase.
J. Mol. Biol. V. 415 514 2012
PubMed-ID: 22138343  |  Reference-DOI: 10.1016/J.JMB.2011.11.022

(-) Compounds

Molecule 1 - ADP-RIBOSYL CYCLASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 3.2.2.5
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Plasmid: PPICZALPHAA
    Expression System Taxid: 4922
    Organism Common: CALIFORNIA SEA HARE
    Organism Scientific: APLYSIA CALIFORNICA
    Organism Taxid: 6500
    Synonym: ADRC, NAD GLYCOHYDROLASE, NAD(+) NUCLEOSIDASE, NADASE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x):     E  H
Biological Unit 2 (1x):  B    G 
Biological Unit 3 (1x): A  D    
Biological Unit 4 (1x):   C  F  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
1G2Q6Ligand/IonGUANOSINE DIPHOSPHATE RIBOSE
2NGD1Ligand/Ion3-(AMINOCARBONYL)-1-[(2R,3R,4S,5R)-5-({[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(2-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHO(HYDROXY)PHOSPHORYL]OXY}METHYL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]PYRIDINIUM
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1G2Q2Ligand/IonGUANOSINE DIPHOSPHATE RIBOSE
2NGD-1Ligand/Ion3-(AMINOCARBONYL)-1-[(2R,3R,4S,5R)-5-({[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(2-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHO(HYDROXY)PHOSPHORYL]OXY}METHYL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]PYRIDINIUM
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1G2Q2Ligand/IonGUANOSINE DIPHOSPHATE RIBOSE
2NGD-1Ligand/Ion3-(AMINOCARBONYL)-1-[(2R,3R,4S,5R)-5-({[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(2-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHO(HYDROXY)PHOSPHORYL]OXY}METHYL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]PYRIDINIUM
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1G2Q1Ligand/IonGUANOSINE DIPHOSPHATE RIBOSE
2NGD-1Ligand/Ion3-(AMINOCARBONYL)-1-[(2R,3R,4S,5R)-5-({[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(2-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHO(HYDROXY)PHOSPHORYL]OXY}METHYL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]PYRIDINIUM
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1G2Q1Ligand/IonGUANOSINE DIPHOSPHATE RIBOSE
2NGD1Ligand/Ion3-(AMINOCARBONYL)-1-[(2R,3R,4S,5R)-5-({[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(2-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHO(HYDROXY)PHOSPHORYL]OXY}METHYL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]PYRIDINIUM

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:76 , TRP A:77 , SER A:78 , GLY A:79 , GLU A:98 , ASN A:107 , SER A:108 , TRP A:140 , SER A:144 , SER A:173 , PHE A:174 , PHE A:175 , GLU A:179 , HOH A:2095 , HOH A:2125 , HOH A:2151 , HOH A:2202 , HOH A:2203BINDING SITE FOR RESIDUE G2Q A 301
2AC2SOFTWAREPHE B:76 , TRP B:77 , SER B:78 , GLY B:79 , LEU B:97 , GLU B:98 , ASN B:107 , SER B:108 , TRP B:140 , SER B:144 , ARG B:170 , SER B:173 , PHE B:174 , PHE B:175 , GLU B:179 , HOH B:2090 , HOH B:2115 , HOH B:2154BINDING SITE FOR RESIDUE G2Q B 301
3AC3SOFTWAREPHE C:76 , TRP C:77 , SER C:78 , GLY C:79 , GLU C:98 , ASN C:107 , SER C:108 , TRP C:140 , SER C:144 , SER C:173 , PHE C:174 , PHE C:175 , GLU C:179 , HOH C:2105 , HOH C:2106 , HOH C:2130 , HOH C:2155 , HOH C:2206 , HOH C:2207 , HOH C:2208BINDING SITE FOR RESIDUE G2Q C 301
4AC4SOFTWAREPHE E:76 , TRP E:77 , SER E:78 , GLY E:79 , LEU E:97 , GLU E:98 , ASN E:107 , SER E:108 , TRP E:140 , SER E:144 , ARG E:170 , SER E:173 , PHE E:174 , PHE E:175 , GLU E:179 , HOH E:2088 , HOH E:2147BINDING SITE FOR RESIDUE G2Q E 301
5AC5SOFTWAREPHE F:76 , TRP F:77 , SER F:78 , GLY F:79 , LEU F:97 , GLU F:98 , ASN F:107 , TRP F:140 , SER F:144 , ARG F:170 , SER F:173 , PHE F:174 , PHE F:175 , GLU F:179 , HOH F:2070 , HOH F:2088BINDING SITE FOR RESIDUE NGD F5573
6AC6SOFTWAREPHE G:76 , TRP G:77 , SER G:78 , GLY G:79 , GLU G:98 , ASN G:107 , TRP G:140 , SER G:144 , ARG G:170 , SER G:173 , PHE G:174 , PHE G:175 , GLU G:179 , HOH G:2049 , HOH G:2063BINDING SITE FOR RESIDUE G2Q G 301
7AC7SOFTWAREPHE H:76 , TRP H:77 , SER H:78 , GLY H:79 , LEU H:97 , GLU H:98 , ASN H:107 , SER H:108 , TRP H:140 , SER H:144 , ARG H:170 , SER H:173 , PHE H:174 , PHE H:175 , GLU H:179 , HOH H:2054BINDING SITE FOR RESIDUE G2Q H 301

(-) SS Bonds  (40, 40)

Asymmetric Unit
No.Residues
1A:15 -A:34
2A:51 -A:131
3A:112 -A:125
4A:206 -A:227
5A:239 -A:248
6B:15 -B:34
7B:51 -B:131
8B:112 -B:125
9B:206 -B:227
10B:239 -B:248
11C:15 -C:34
12C:51 -C:131
13C:112 -C:125
14C:206 -C:227
15C:239 -C:248
16D:15 -D:34
17D:51 -D:131
18D:112 -D:125
19D:206 -D:227
20D:239 -D:248
21E:15 -E:34
22E:51 -E:131
23E:112 -E:125
24E:206 -E:227
25E:239 -E:248
26F:15 -F:34
27F:51 -F:131
28F:112 -F:125
29F:206 -F:227
30F:239 -F:248
31G:15 -G:34
32G:51 -G:131
33G:112 -G:125
34G:206 -G:227
35G:239 -G:248
36H:15 -H:34
37H:51 -H:131
38H:112 -H:125
39H:206 -H:227
40H:239 -H:248

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Asn A:117 -Pro A:118
2Asn B:117 -Pro B:118
3Asn C:117 -Pro C:118
4Asn D:117 -Pro D:118
5Asn E:117 -Pro E:118
6Asn F:117 -Pro F:118
7Asn G:117 -Pro G:118
8Asn H:117 -Pro H:118

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ZWO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ZWO)

(-) Exons   (0, 0)

(no "Exon" information available for 3ZWO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:252
 aligned with NADA_APLCA | P29241 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:252
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273  
           NADA_APLCA    24 AIVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 275
               SCOP domains d3zwoa_ A: automated matches                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.............hhhhhhhhh........eeee.hhhhhhhhhh......hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee............hhhhhhhhhhh...eeeeeeeee............hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zwo A   0 AIVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 251
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249  


Chain B from PDB  Type:PROTEIN  Length:251
 aligned with NADA_APLCA | P29241 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:251
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274 
           NADA_APLCA    25 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 275
               SCOP domains d3zwob_ B: automated matches                                                                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh...........hhhhhhhhh........eeee.hhhhhhhhhh......hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee............hhhhhhhhhhh...eeeeeeeee............hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh...hhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zwo B   1 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 251
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250 


Chain C from PDB  Type:PROTEIN  Length:252
 aligned with NADA_APLCA | P29241 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:252
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273  
           NADA_APLCA    24 AIVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 275
               SCOP domains d3zwoc_ C: automated matches                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh...........hhhhhhhhh........eeee.hhhhhhhhhh......hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee............hhhhhhhhhhh...eeeeeeeee............hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zwo C   0 AIVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 251
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249  


Chain D from PDB  Type:PROTEIN  Length:251
 aligned with NADA_APLCA | P29241 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:251
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274 
           NADA_APLCA    25 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 275
               SCOP domains d3zwod_ D: automated matches                                                                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh...........hhhhhhhhh........eeee.hhhhhhhhhh......hhhhhhhhhhhh........................hhhhhhhhhhhhhhhhhhhh.eeeeeeee............hhhhhhhhhhh...eeeeeeeee............hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zwo D   1 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 251
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250 


Chain E from PDB  Type:PROTEIN  Length:251
 aligned with NADA_APLCA | P29241 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:251
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274 
           NADA_APLCA    25 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 275
               SCOP domains d3zwoe_ E: automated matches                                                                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh...........hhhhhhhhh.......eeeee.hhhhhhhhhh......hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee............hhhhhhhhhhh...eeeeeeeee............hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zwo E   1 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 251
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250 


Chain F from PDB  Type:PROTEIN  Length:251
 aligned with NADA_APLCA | P29241 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:251
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274 
           NADA_APLCA    25 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 275
               SCOP domains d3zwof_ F: automated matches                                                                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh...........hhhhhhhhh........eeee.hhhhhhhhhh......hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee............hhhhhhhhhhh...eeeeeeeee............hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zwo F   1 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 251
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250 


Chain G from PDB  Type:PROTEIN  Length:252
 aligned with NADA_APLCA | P29241 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:252
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273  
           NADA_APLCA    24 AIVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 275
               SCOP domains d3zwog_ G: automated matches                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.............hhhhhhhhh........eeee.hhhhhhhhhh......hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee............hhhhhhhhhhh...eeeeeeeee............hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zwo G   0 AIVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 251
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249  


Chain H from PDB  Type:PROTEIN  Length:251
 aligned with NADA_APLCA | P29241 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:251
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274 
           NADA_APLCA    25 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 275
               SCOP domains d3zwoh_ H: automated matches                                                                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh...........hhhhhhhhh.......eeeee.hhhhhhhhhh......hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee............hhhhhhhhhhh...eeeeeeeee............hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zwo H   1 IVPTRELENVFLGRCKDYEITRYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 251
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
   Legend:   → Mismatch (orange background)
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 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZWO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZWO)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (NADA_APLCA | P29241)
molecular function
    GO:0050135    NAD(P)+ nucleosidase activity    Catalysis of the reaction: NAD(P)+ + H2O = ADP-ribose(P) + nicotinamide.
    GO:0003953    NAD+ nucleosidase activity    Catalysis of the reaction: NAD+ + H2O = nicotinamide + ADP-ribose.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0007338    single fertilization    The union of male and female gametes to form a zygote.
cellular component
    GO:0031410    cytoplasmic vesicle    A vesicle found in the cytoplasm of a cell.

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  3zwo
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  3.2.2.5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NADA_APLCA | P29241: 1lbe 1r0s 1r12 1r15 1r16 3i9j 3i9k 3i9l 3i9o 3zwm 3zwn 3zwp 3zwv 3zww 3zwx 3zwy

(-) Related Entries Specified in the PDB File

1lbe APLYSIA ADP RIBOSYL CYCLASE
1r0s CRYSTAL STRUCTURE OF ADP-RIBOSYL CYCLASE GLU179ALA MUTANT
1r12 NATIVE APLYSIA ADP RIBOSYL CYCLASE
1r15 APLYSIA ADP RIBOSYL CYCLASE WITH BOUND NICOTINAMIDE AND R5P
1r16 APLYSIA ADP RIBOSYL CYCLASE WITH BOUND PYRIDYLCARBINOL ANDR5P
3zwm CRYSTAL STRUCTURE OF ADP RIBOSYL CYCLASE COMPLEXED WITH SUBSTRATE NAD AND PRODUCT CADPR
3zwn CRYSTAL STRUCTURE OF APLYSIA CYCLASE COMPLEXED WITH SUBSTRATE NGD AND PRODUCT CGDPR
3zwp CRYSTAL STRUCTURE OF ADP RIBOSYL CYCLASE COMPLEXED WITH ARA-2'F-ADP-RIBOSE AT 2.1 ANGSTROM
3zwv CRYSTAL STRUCTURE OF ADP-RIBOSYL CYCLASE COMPLEXED WITH ARA-2'F-ADP-RIBOSE AT 2.3 ANGSTROM
3zww CRYSTAL STRUCTURE OF ADP-RIBOSYL CYCLASE COMPLEXED WITH ARA-2'F-ADP-RIBOSE AT 2.3 ANGSTROM
3zwx CRYSTAL STRUCTURE OF ADP-RIBOSYL CYCLASE COMPLEXED WITH 8-BROMO-ADP-RIBOSE
3zwy CRYSTAL STRUCTURE OF ADP-RIBOSYL CYCLASE COMPLEXED WITH 8-BROMO-ADP-RIBOSE AND CYCLIC 8-BROMO-CYCLIC-ADP- RIBOSE