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(-) Description

Title :  NEUTRON AND X-RAY JOINT REFINED STRUCTURE OF PCCEL45A WITH CELLOPENTAOSE AT 298K.
 
Authors :  A. Nakamura, T. Ishida, K. Kusaka, T. Yamada, I. Tanaka, N. Niimura, M. S K. Igarashi
Date :  22 Dec 14  (Deposition) - 14 Oct 15  (Release) - 04 Nov 15  (Revision)
Method :  NEUTRON DIFFRACTION; X-RAY DIFFRACTION
Resolution :  1.52
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Nakamura, T. Ishida, K. Kusaka, T. Yamada, S. Fushinobu, I. Tanaka, S. Kaneko, K. Ohta, H. Tanaka, K. Inaka, Y. Higuchi, N. Niimura, M. Samejima, K. Igarashi
Newton S Cradle Proton Relay With Amide Imidic Acid Tautomerization In Inverting Cellulase Visualized By Neutro Crystallography
Sci Adv V. 1 00263 2015
PubMed: search  |  Reference-DOI: 10.1126/SCIADV.1500263

(-) Compounds

Molecule 1 - ENDOGLUCANASE V-LIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Plasmid: PPICZA
    Expression System Strain: KM71H
    Expression System Taxid: 4922
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 27-206
    Gene: EGV, PCCEL45A
    Organism Common: WHITE-ROT FUNGUS
    Organism Scientific: PHANEROCHAETE CHRYSOSPORIUM
    Organism Taxid: 5306
    Strain: K-3

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 151)

Asymmetric Unit (3, 151)
No.NameCountTypeFull Name
141Q1Mod. Amino Acid4-IMINO-L-HOMOSERINE
2CE51Ligand/IonCELLOPENTAOSE
3DOD149Ligand/Ion
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
141Q1Mod. Amino Acid4-IMINO-L-HOMOSERINE
2CE51Ligand/IonCELLOPENTAOSE
3DOD-1Ligand/Ion

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:16 , MET A:17 , TYR A:18 , GLY A:22 , SER A:23 , ASP A:65 , TYR A:67 , SER A:68 , 41Q A:92 , PHE A:95 , ASP A:114 , GLY A:129 , HIS A:130 , GLY A:131 , ALA A:132 , DOD A:321 , DOD A:361 , DOD A:372 , DOD A:383 , DOD A:416 , DOD A:428 , DOD A:432 , DOD A:433 , DOD A:439BINDING SITE FOR RESIDUE CE5 A 201

(-) SS Bonds  (5, 5)

Asymmetric Unit
No.Residues
1A:21 -A:116
2A:26 -A:54
3A:57 -A:142
4A:87 -A:96
5A:158 -A:172

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:73 -Pro A:74
2Trp A:167 -Pro A:168

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhh....eeeeeeeee...............eeeeehhhhh.............eeeeeeee..............eeeeeeeee....hhhhhh.............eeeeee...hhhhhhh......eeeeeeeehhhhh.............hhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3x2p A   1 ATGGYVQQATGQASFTMYSGCGSPACGKAASGFTAAINQLAFGSAPGLGAGDACGRCFALTGNHDPYSPNYTGPFGQTIVVKVTDLCPVQGnQEFCGQTTSNPTNQHGMPFHFDICEDTGGSAKFFPSGHGALTGTFTEVSCSQWSGSDGGQLWNGACLSGETAPNWPSTACGNKGTAPS 180
                                    10        20        30        40        50        60        70        80        90 |     100       110       120       130       140       150       160       170       180
                                                                                                                      92-41Q
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 Classification and Annotation

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(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B3Y002_PHACH | B3Y002: 5kjo 5kjq
UniProtKB/TrEMBL
        B3Y002_PHACH | B3Y002: 3x2g 3x2h 3x2i 3x2j 3x2k 3x2l 3x2m 3x2n 3x2o 4zm7

(-) Related Entries Specified in the PDB File

3x2g 3x2h 3x2i 3x2j 3x2k 3x2l 3x2m 3x2n 3x2o