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(-) Description

Title :  X-RAY STRUCTURE OF PCCEL45A WITH CELLOPENTAOSE AT 0.64 ANGSTROM RESOLUTION.
 
Authors :  A. Nakamura, T. Ishida, M. Samejima, K. Igarashi
Date :  22 Dec 14  (Deposition) - 14 Oct 15  (Release) - 30 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.64
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Nakamura, T. Ishida, K. Kusaka, T. Yamada, S. Fushinobu, I. Tanaka, S. Kanako, K. Ohta, H. Tanaka, K. Inaka, Y. Higuchi, N. Niimura, M. Samejima, K. Igarashi
Newton S Cradle Proton Relay With Amide Imidic Acid Tautomerization In Inverting Cellulase Visualized By Neutro Crystallography
Sci Adv V. 1 00263 2015
PubMed: search  |  Reference-DOI: 10.1126/SCIADV.1500263

(-) Compounds

Molecule 1 - ENDOGLUCANASE V-LIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Plasmid: PPICZA
    Expression System Strain: KM71H
    Expression System Taxid: 4922
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 27-206
    Gene: EGV, PCCEL45A
    Organism Common: WHITE-ROT FUNGUS
    Organism Scientific: PHANEROCHAETE CHRYSOSPORIUM
    Organism Taxid: 5306
    Strain: K-3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1BGC4Ligand/IonBETA-D-GLUCOSE
2CE51Ligand/IonCELLOPENTAOSE
3GLC1Ligand/IonALPHA-D-GLUCOSE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:22 , SER A:23 , SER A:68 , BGC A:202 , HOH A:406 , HOH A:419 , HOH A:432 , HOH A:453 , HOH A:463BINDING SITE FOR RESIDUE GLC A 201
2AC2SOFTWARESER A:23 , ASP A:65 , TYR A:67 , SER A:68 , GLY A:129 , GLC A:201 , BGC A:203 , HOH A:392 , HOH A:436 , HOH A:445BINDING SITE FOR RESIDUE BGC A 202
3AC3SOFTWARETYR A:67 , GLY A:129 , HIS A:130 , GLY A:131 , ALA A:132 , BGC A:202 , BGC A:204 , HOH A:338 , HOH A:445BINDING SITE FOR RESIDUE BGC A 203
4AC4SOFTWARETHR A:16 , MET A:17 , TYR A:67 , PHE A:95 , GLY A:131 , BGC A:203 , BGC A:205 , HOH A:390 , HOH A:491BINDING SITE FOR RESIDUE BGC A 204
5AC5SOFTWARETHR A:16 , MET A:17 , TYR A:18 , ASN A:92 , ASP A:114 , BGC A:204 , CE5 A:206 , HOH A:328 , HOH A:344 , HOH A:429 , HOH A:431 , HOH A:506BINDING SITE FOR RESIDUE BGC A 205
6AC6SOFTWARETYR A:18 , SER A:23 , PRO A:24 , ALA A:25 , ALA A:36 , PRO A:46 , GLY A:47 , LEU A:48 , GLY A:49 , ASP A:85 , LEU A:86 , CYS A:87 , PRO A:88 , ASN A:92 , ASP A:114 , TRP A:154 , ASN A:155 , BGC A:205 , HOH A:353 , HOH A:455 , HOH A:462 , HOH A:548BINDING SITE FOR RESIDUE CE5 A 206

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1A:21 -A:116
2A:26 -A:54
3A:57 -A:142
4A:87 -A:96
5A:158 -A:172

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:73 -Pro A:74
2Trp A:167 -Pro A:168

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3X2M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3X2M)

(-) Exons   (0, 0)

(no "Exon" information available for 3X2M)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhh....eeeeeeeee...............eeeeehhhhh.............eeeeeeee..............eeeeeeeee.......................eeeeee...hhhhhhh......eeeeeeeehhhhh.............hhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3x2m A   1 ATGGYVQQATGQASFTMYSGCGSPACGKAASGFTAAINQLAFGSAPGLGAGDACGRCFALTGNHDPYSPNYTGPFGQTIVVKVTDLCPVQGNQEFCGQTTSNPTNQHGMPFHFDICEDTGGSAKFFPSGHGALTGTFTEVSCSQWSGSDGGQLWNGACLSGETAPNWPSTACGNKGTAPS 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3X2M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3X2M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3X2M)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B3Y002_PHACH | B3Y002: 5kjo 5kjq
UniProtKB/TrEMBL
        B3Y002_PHACH | B3Y002: 3x2g 3x2h 3x2i 3x2j 3x2k 3x2l 3x2n 3x2o 3x2p 4zm7

(-) Related Entries Specified in the PDB File

3x2g 3x2h 3x2i 3x2j 3x2k 3x2l 3x2n 3x2o 3x2p