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(-) Description

Title :  X-RAY STRUCTURE OF PCCEL45A D114N WITH CELLOPENTAOSE AT 95K.
 
Authors :  A. Nakamura, T. Ishida, M. Samejima, K. Igarashi
Date :  22 Dec 14  (Deposition) - 07 Oct 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.18
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Nakamura, T. Ishida, K. Kusaka, T. Yamada, S. Fushinobu, I. Tanaka, S. Kaneko, K. Ohta, H. Tanaka, K. Inaka, Y. Higuchi, N. Niimura, M. Samejima, K. Igarashi
Newton S Cradle Proton Relay With Amide Imidic Acid Tautomerization In Inverting Cellulase Visualized By Neutro Crystallography
Sci Adv V. 1 00263 2015
PubMed: search  |  Reference-DOI: 10.1126/SCIADV.1500263

(-) Compounds

Molecule 1 - ENDOGLUCANASE V-LIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Plasmid: PPICZA
    Expression System Strain: KM71H
    Expression System Taxid: 4922
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 27-206
    Gene: EGV, PCCEL45A
    Mutation: YES
    Organism Common: WHITE-ROT FUNGUS
    Organism Scientific: PHANEROCHAETE CHRYSOSPORIUM
    Organism Taxid: 5306
    Strain: K-3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 13)

Asymmetric/Biological Unit (5, 13)
No.NameCountTypeFull Name
140S5Ligand/Ion3-METHYLPENTANE-1,5-DIOL
2BGC4Ligand/IonBETA-D-GLUCOSE
3CE51Ligand/IonCELLOPENTAOSE
4GLC1Ligand/IonALPHA-D-GLUCOSE
5TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:1 , GLY A:4 , THR A:16 , MET A:17 , ASP A:65 , TYR A:67 , SER A:68 , ASN A:92 , GLU A:94 , PHE A:95 , ASN A:114 , GLY A:129 , HIS A:130 , GLY A:131 , ALA A:132 , THR A:177 , GLC A:206 , HOH A:310 , HOH A:314 , HOH A:340 , HOH A:368 , HOH A:381 , HOH A:390 , HOH A:412 , HOH A:424 , HOH A:425 , HOH A:433 , HOH A:435 , HOH A:438 , HOH A:465 , HOH A:477 , HOH A:482 , HOH A:499 , HOH A:504 , HOH A:531BINDING SITE FOR RESIDUE CE5 A 201
02AC2SOFTWARETYR A:18 , ALA A:36 , LEU A:86 , ASN A:92 , ASN A:114 , CE5 A:201 , BGC A:207 , HOH A:362 , HOH A:363 , HOH A:480 , HOH A:484 , HOH A:528BINDING SITE FOR RESIDUE GLC A 206
03AC3SOFTWAREGLY A:20 , SER A:23 , PRO A:46 , ASP A:85 , LEU A:86 , GLC A:206 , BGC A:208 , HOH A:316 , HOH A:324 , HOH A:363 , HOH A:429 , HOH A:490BINDING SITE FOR RESIDUE BGC A 207
04AC4SOFTWARESER A:23 , PRO A:24 , ALA A:25 , PRO A:46 , GLY A:47 , LEU A:48 , GLY A:49 , TRP A:154 , BGC A:207 , BGC A:209 , 40S A:211 , HOH A:311BINDING SITE FOR RESIDUE BGC A 208
05AC5SOFTWAREGLY A:47 , TRP A:154 , BGC A:208 , BGC A:210 , 40S A:211 , 40S A:213 , HOH A:346 , HOH A:352 , HOH A:359 , HOH A:387 , HOH A:485BINDING SITE FOR RESIDUE BGC A 209
06AC6SOFTWARETRP A:154 , ASN A:155 , BGC A:209 , HOH A:345 , HOH A:387 , HOH A:455 , HOH A:505 , HOH A:524BINDING SITE FOR RESIDUE BGC A 210
07AC7SOFTWAREGLN A:39 , ALA A:45 , LEU A:153 , GLY A:176 , THR A:177 , BGC A:208 , BGC A:209 , HOH A:421BINDING SITE FOR RESIDUE 40S A 211
08AC8SOFTWAREALA A:30 , SER A:31 , GLY A:47 , ASP A:149 , GLY A:150 , SER A:180 , HOH A:312 , HOH A:322 , HOH A:352 , HOH A:360 , HOH A:471BINDING SITE FOR RESIDUE 40S A 212
09AC9SOFTWAREGLY A:22 , SER A:31 , ASP A:118 , BGC A:209 , HOH A:317 , HOH A:346BINDING SITE FOR RESIDUE 40S A 213
10BC1SOFTWAREASN A:102 , THR A:119 , TRS A:217 , HOH A:317 , HOH A:411BINDING SITE FOR RESIDUE 40S A 214
11BC2SOFTWAREALA A:123 , LYS A:124 , PHE A:126 , SER A:128 , THR A:163 , PRO A:165 , HOH A:374 , HOH A:415BINDING SITE FOR RESIDUE 40S A 215
12BC3SOFTWAREARG A:56 , CYS A:57 , GLU A:117 , GLU A:139 , VAL A:140 , SER A:141 , CYS A:142 , GLY A:161 , GLU A:162 , ALA A:164 , PRO A:165 , ASN A:166 , HOH A:358 , HOH A:460BINDING SITE FOR RESIDUE TRS A 216
13BC4SOFTWAREASN A:102 , THR A:104 , ASN A:105 , GLN A:106 , 40S A:214 , HOH A:348 , HOH A:414 , HOH A:454 , HOH A:476BINDING SITE FOR RESIDUE TRS A 217

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1A:21 -A:116
2A:26 -A:54
3A:57 -A:142
4A:87 -A:96
5A:158 -A:172

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:73 -Pro A:74
2Trp A:167 -Pro A:168

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3X2K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3X2K)

(-) Exons   (0, 0)

(no "Exon" information available for 3X2K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhh....eeeeeeeee...............eeeeehhhhh.............eeeeeeee..............eeeeeeeee....hhhhhh.............eeeeee...hhhhhhh......eeeeeeeehhhhh.............hhhhh................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3x2k A   1 ATGGYVQQATGQASFTMYSGCGSPACGKAASGFTAAINQLAFGSAPGLGAGDACGRCFALTGNHDPYSPNYTGPFGQTIVVKVTDLCPVQGNQEFCGQTTSNPTNQHGMPFHFNICEDTGGSAKFFPSGHGALTGTFTEVSCSQWSGSDGGQLWNGACLSGETAPNWPSTACGNKGTAPS 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3X2K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3X2K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3X2K)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B3Y002_PHACH | B3Y002: 5kjo 5kjq
UniProtKB/TrEMBL
        B3Y002_PHACH | B3Y002: 3x2g 3x2h 3x2i 3x2j 3x2l 3x2m 3x2n 3x2o 3x2p 4zm7

(-) Related Entries Specified in the PDB File

3x2g 3x2h 3x2i 3x2j 3x2l 3x2m 3x2n 3x2o 3x2p