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(-) Description

Title :  ADP RIBOSE PYROPHOSPHATASE FROM THERMUS THERMOPHILUS HB8 IN APO STATE AT 0.92 ANGSTROM RESOLUTION
 
Authors :  Y. Furuike, Y. Akita, I. Miyahara, N. Kamiya
Date :  16 Oct 14  (Deposition) - 27 Apr 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.92
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Nudix Motif, Adp Ribose Hydrolase, Adp Ribose, Cytosol, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Furuike, Y. Akita, I. Miyahara, N. Kamiya
Adp-Ribose Pyrophosphatase Reaction In Crystalline State Conducted By Consecutive Binding Of Two Manganese(Ii) Ions As Cofactors
Biochemistry V. 55 1801 2016
PubMed-ID: 26979298  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B00886

(-) Compounds

Molecule 1 - ADP-RIBOSE PYROPHOSPHATASE
    Chains: A
    EC Number: 3.6.1.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NDX4
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 274

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2SO44Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:33 , ALA A:66 , SER A:102 , PRO A:103 , GLY A:104 , GLU A:108 , SO4 A:203 , HOH A:331 , HOH A:352 , HOH A:377 , HOH A:378 , HOH A:385 , HOH A:386BINDING SITE FOR RESIDUE GOL A 201
2AC2SOFTWAREARG A:51 , ARG A:80 , SER A:90 , ARG A:144 , GLU A:149 , HOH A:323 , HOH A:389 , HOH A:422BINDING SITE FOR RESIDUE SO4 A 202
3AC3SOFTWAREARG A:54 , ALA A:66 , GLY A:67 , LEU A:68 , GOL A:201 , HOH A:309 , HOH A:324 , HOH A:329 , HOH A:330 , HOH A:386BINDING SITE FOR RESIDUE SO4 A 203
4AC4SOFTWAREGLY A:17 , ARG A:18 , ILE A:19 , LEU A:20 , ASN A:21 , HIS A:33 , LYS A:34 , HOH A:337BINDING SITE FOR RESIDUE GOL A 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3X0J)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3X0J)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3X0J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3X0J)

(-) Exons   (0, 0)

(no "Exon" information available for 3X0J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...eeeeee..eeeeee..eeeeeeee..eeeeee..............eee.....hhhhhhhhhhhhhhheeeeeeeeeeee........eeeeeeeeeeee.........eeeeehhhhhhhhhhh.....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x0j A  10 ERTYLYRGRILNLALEGRYEIVEHKPAVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEETGLSGDLTYLFSYFVSPGFTDEKTHVFLAENLKEVEAHEDEAIEVVWMRPEEALERHQRGEVEFSATGLVGVLYYHAFLR 168
                                    19        29        39        49        59        69        79        89        99       109       119    || 131       141       151       161       
                                                                                                                                            124|                                         
                                                                                                                                             127
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3X0J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3X0J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3X0J)

(-) Gene Ontology  (2, 3)

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  Q84CU3_THETH | Q84CU3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q84CU3_THETH | Q84CU3: 3x0i
UniProtKB/TrEMBL
        Q5SKW5_THET8 | Q5SKW5: 3x0i 3x0k 3x0l 3x0m 3x0n 3x0o 3x0p 3x0q 3x0r 3x0s
        Q84CU3_THETH | Q84CU3: 1v8i 1v8l 1v8m 1v8n 1v8r 1v8s 1v8t 1v8u 1v8v 1v8w 1v8y

(-) Related Entries Specified in the PDB File

3x0i 3x0k 3x0l 3x0m 3x0n 3x0o 3x0p 3x0q 3x0r 3x0s