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(-) Description

Title :  ADP RIBOSE PYROPHOSPHATASE FROM THERMUS THERMOPHILUS HB8 IN ES-STATE AT 1.00 ANGSTROM RESOLUTION
 
Authors :  Y. Furuike, Y. Akita, I. Miyahara, N. Kamiya
Date :  17 Oct 14  (Deposition) - 27 Apr 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Nudix Motif, Adp Ribose Hydrolase, Adp Ribose, Cytosol, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Furuike, Y. Akita, I. Miyahara, N. Kamiya
Adp-Ribose Pyrophosphatase Reaction In Crystalline State Conducted By Consecutive Binding Of Two Manganese(Ii) Ions As Cofactors
Biochemistry V. 55 1801 2016
PubMed-ID: 26979298  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B00886

(-) Compounds

Molecule 1 - ADP-RIBOSE PYROPHOSPHATASE
    Chains: A
    EC Number: 3.6.1.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TTHA0528
    Organism Scientific: THERMUS THERMOPHILUS HB8
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1AR61Ligand/Ion[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGENPHOSPHATE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1AR62Ligand/Ion[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGENPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:19 , ARG A:27 , TYR A:28 , GLU A:29 , ARG A:54 , ALA A:66 , GLY A:67 , LEU A:68 , GLU A:82 , SER A:102 , PRO A:103 , GLY A:104 , GLU A:108 , HOH A:303 , HOH A:308 , HOH A:311 , HOH A:312 , HOH A:314 , HOH A:317 , HOH A:373 , HOH A:374 , HOH A:389 , HOH A:397 , HOH A:398 , HOH A:399 , HOH A:400 , HOH A:406 , HOH A:412BINDING SITE FOR RESIDUE AR6 A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3X0L)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3X0L)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3X0L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3X0L)

(-) Exons   (0, 0)

(no "Exon" information available for 3X0L)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeeee..eeeee...eeeeeeee..eeeeee..............eee.....hhhhhhhhhhhhhhheeeeeeeeeeee........eeeeeeeeeeee.........eeeeehhhhhhhhhhh.....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x0l A   9 VERTYLYRGRILNLALEGRYEIVEHKPAVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEETGLSGDLTYLFSYFVSPGFTDEKTHVFLAENLKEVEAHEDEAIEVVWMRPEEALERHQRGEVEFSATGLVGVLYYHAFLR 168
                                    18        28        38        48        58        68        78        88        98       108       118     ||130       140       150       160        
                                                                                                                                             124|                                         
                                                                                                                                              127
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3X0L)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3X0L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3X0L)

(-) Gene Ontology  (1, 1)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5SKW5_THET8 | Q5SKW5: 3x0i 3x0j 3x0k 3x0m 3x0n 3x0o 3x0p 3x0q 3x0r 3x0s

(-) Related Entries Specified in the PDB File

3x0i THE SAME PROTEIN IN APO STATE AT 0.91 ANGSTROM RESOLUTION
3x0j THE SAME PROTEIN IN APO STATE AT 0.92 ANGSTROM RESOLUTION
3x0k THE SAME PROTEIN IN ES STATE AT 0.97 ANGSTROM RESOLUTION
3x0m THE SAME PROTEIN IN ESM STATE AT REACTION TIME OF 3MIN
3x0n THE SAME PROTEIN IN ESM STATE AT REACTION TIME OF 6MIN
3x0o THE SAME PROTEIN IN ESMM STATE AT REACTION TIME OF 10MIN
3x0p THE SAME PROTEIN IN ESMM STATE AT REACTION TIME OF 15MIN
3x0q THE SAME PROTEIN IN ESMM STATE AT REACTION TIME OF 20MIN
3x0r THE SAME PROTEIN IN E' STATE AT REACTION TIME OF 30MIN
3xrs THE SAME PROTEIN IN E'-STATE AT REACTION TIME OF 50 MIN