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(-) Description

Title :  ADP RIBOSE PYROPHOSPHATASE FROM THERMUS THERMOPHILUS HB8 IN E'-STATE AT REACTION TIME OF 50 MIN
 
Authors :  Y. Furuike, Y. Akita, I. Miyahara, N. Kamiya
Date :  17 Oct 14  (Deposition) - 27 Apr 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Nudix Motif, Adp Ribose Hydrolase, Adp Ribose, Cytosol, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Furuike, Y. Akita, I. Miyahara, N. Kamiya
Adp-Ribose Pyrophosphatase Reaction In Crystalline State Conducted By Consecutive Binding Of Two Manganese(Ii) Ions As Cofactors
Biochemistry V. 55 1801 2016
PubMed-ID: 26979298  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B00886

(-) Compounds

Molecule 1 - ADP-RIBOSE PYROPHOSPHATASE
    Chains: A
    EC Number: 3.6.1.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TTHA0528
    Organism Scientific: THERMUS THERMOPHILUS HB8
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MN1Ligand/IonMANGANESE (II) ION
3SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MN-1Ligand/IonMANGANESE (II) ION
3SO44Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:17 , ARG A:18 , ILE A:19 , LEU A:20 , LYS A:34 , HOH A:348BINDING SITE FOR RESIDUE GOL A 201
2AC2SOFTWAREHIS A:33 , ALA A:66 , SER A:102 , PRO A:103 , GLY A:104 , GLU A:108 , SO4 A:204 , HOH A:302 , HOH A:307 , HOH A:359BINDING SITE FOR RESIDUE GOL A 202
3AC3SOFTWAREARG A:51 , SER A:90 , ARG A:144 , GLU A:149 , HOH A:330 , HOH A:426BINDING SITE FOR RESIDUE SO4 A 203
4AC4SOFTWAREARG A:54 , ALA A:66 , GLY A:67 , LEU A:68 , GOL A:202 , HOH A:302 , HOH A:318 , HOH A:320 , HOH A:339 , HOH A:343BINDING SITE FOR RESIDUE SO4 A 204
5AC5SOFTWAREILE A:131 , HOH A:398 , HOH A:399BINDING SITE FOR RESIDUE MN A 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3X0S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3X0S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3X0S)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3X0S)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:154
                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee..eeeee...eeeeeeee..eeeeee..............eee.....hhhhhhhhhhhhhhheeeeeeeeeeee........eeeeeeeeeeee.....eeeeehhhhhhhhhhh.....hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x0s A  10 ERTYLYRGRILNLALEGRYEIVEHKPAVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEETGLSGDLTYLFSYFVSPGFTDEKTHVFLAENLKEVEAAIEVVWMRPEEALERHQRGEVEFSATGLVGVLYYHAFLRG 169
                                    19        29        39        49        59        69        79        89        99       109       119   ||  135       145       155       165    
                                                                                                                                           123|                                       
                                                                                                                                            130
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3X0S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3X0S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3X0S)

(-) Gene Ontology  (1, 1)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5SKW5_THET8 | Q5SKW5: 3x0i 3x0j 3x0k 3x0l 3x0m 3x0n 3x0o 3x0p 3x0q 3x0r

(-) Related Entries Specified in the PDB File

3x0i THE SAME PROTEIN IN APO STATE AT 0.91 ANGSTROM RESOLUTION
3x0j THE SAME PROTEIN IN APO STATE AT 0.92 ANGSTROM RESOLUTION
3x0k THE SAME PROTEIN IN ES STATE AT 0.97 ANGSTROM RESOLUTION
3x0l THE SAME PROTEIN IN ES STATE AT 1.00 ANGSTROM RESOLUTION
3x0m THE SAME PROTEIN IN ESM STATE AT REACTION TIME OF 3MIN
3x0n THE SAME PROTEIN IN ESM STATE AT REACTION TIME OF 6MIN
3x0o THE SAME PROTEIN IN ESMM STATE AT REACTION TIME OF 10MIN
3x0p THE SAME PROTEIN IN ESMM STATE AT REACTION TIME OF 15MIN
3x0q THE SAME PROTEIN IN ESMM STATE AT REACTION TIME OF 20MIN
3x0r THE SAME PROTEIN IN E' STATE AT REACTION TIME OF 30MIN