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(-) Description

Title :  STRUCTURE OF A GLUCOSE DEHYDROGENASE T277F MUTANT IN COMPLEX WITH NADP
 
Authors :  H. Sakuraba, Y. Kanoh, K. Yoneda, T. Ohshima
Date :  10 Sep 13  (Deposition) - 14 May 14  (Release) - 14 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Rossmann Fold, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kanoh, S. Uehara, H. Iwata, K. Yoneda, T. Ohshima, H. Sakuraba
Structural Insight Into Glucose Dehydrogenase From The Thermoacidophilic Archaeon Thermoplasma Volcanium
Acta Crystallogr. , Sect. D V. 70 1271 2014
PubMed: search  |  Reference-DOI: 10.1107/S1399004714002363

(-) Compounds

Molecule 1 - GLUCOSE 1-DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.1.1.47
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GDH, TV1048, TVG1073292
    Mutation: YES
    Organism Scientific: THERMOPLASMA VOLCANIUM
    Organism Taxid: 273116
    Strain: ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1
    Synonym: GDH, GLCDH

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 20)

Asymmetric/Biological Unit (4, 20)
No.NameCountTypeFull Name
11PE8Ligand/IonPENTAETHYLENE GLYCOL
2NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3PGO4Ligand/IonS-1,2-PROPANEDIOL
4ZN4Ligand/IonZINC ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:99 , CYS A:102 , CYS A:110 , ASP A:116BINDING SITE FOR RESIDUE ZN A 1001
02AC2SOFTWAREILE A:192 , SER A:194 , GLY A:195 , SER A:196 , GLU A:197 , ASN A:216 , ARG A:217 , HIS A:218 , TYR A:238 , THR A:252 , SER A:253 , ASP A:255 , THR A:258 , PHE A:275 , GLY A:276 , PHE A:277 , SER A:304 , VAL A:305 , ASP A:306 , HOH A:1127 , HOH A:1147 , HOH A:1167 , VAL C:295BINDING SITE FOR RESIDUE NAP A 1002
03AC3SOFTWAREARG A:95 , LEU A:125 , HIS A:126 , ARG A:130 , TYR A:134BINDING SITE FOR RESIDUE PGO A 1003
04AC4SOFTWARETYR A:82 , ILE A:137 , LEU A:140 , VAL A:141 , LYS A:142 , LYS A:309 , VAL A:313 , ASP B:181 , ILE B:185 , GLY B:209BINDING SITE FOR RESIDUE 1PE A 1004
05AC5SOFTWAREARG A:106 , HOH A:1115 , LYS B:173 , GLN B:178 , SER B:182 , LYS C:173 , ARG C:174BINDING SITE FOR RESIDUE 1PE B 4001
06AC6SOFTWARECYS B:99 , CYS B:102 , CYS B:110 , ASP B:116BINDING SITE FOR RESIDUE ZN B 4002
07AC7SOFTWAREILE B:192 , SER B:194 , GLY B:195 , SER B:196 , GLU B:197 , ASN B:216 , ARG B:217 , HIS B:218 , TYR B:238 , THR B:252 , ASP B:255 , THR B:258 , PHE B:275 , PHE B:277 , SER B:304 , VAL B:305 , ASP B:306 , HOH B:4125 , HOH B:4129 , HOH B:4197 , VAL D:295BINDING SITE FOR RESIDUE NAP B 4003
08AC8SOFTWAREARG B:95 , ALA B:120 , HIS B:126 , ARG B:130 , TYR B:134 , HOH B:4170BINDING SITE FOR RESIDUE PGO B 4004
09AC9SOFTWAREGLN A:178 , SER A:182 , ARG B:106 , GLU B:166 , HIS B:311 , GLN B:314 , HOH B:4119 , HOH B:4200 , ARG D:174BINDING SITE FOR RESIDUE 1PE B 4005
10BC1SOFTWAREASP A:181 , ILE A:185 , ILE B:137 , LEU B:140 , VAL B:141 , LYS B:142 , ASN B:144 , LYS B:309 , VAL B:313 , LEU B:316 , ASP B:317 , HOH B:4145BINDING SITE FOR RESIDUE 1PE B 4006
11BC2SOFTWARECYS C:99 , CYS C:102 , CYS C:110 , ASP C:116BINDING SITE FOR RESIDUE ZN C 1001
12BC3SOFTWAREVAL A:295 , ILE C:192 , GLY C:193 , SER C:194 , GLY C:195 , SER C:196 , GLU C:197 , ASN C:216 , ARG C:217 , HIS C:218 , TYR C:238 , THR C:252 , SER C:253 , THR C:258 , PHE C:275 , PHE C:277 , SER C:304 , VAL C:305 , ASP C:306 , LYS C:349 , HOH C:1129 , HOH C:1131 , HOH C:1147BINDING SITE FOR RESIDUE NAP C 1002
13BC4SOFTWAREARG C:95 , HIS C:126 , ARG C:130 , TYR C:134BINDING SITE FOR RESIDUE PGO C 1003
14BC5SOFTWARELEU C:140 , VAL C:141 , LYS C:142 , ASN C:144 , LYS C:309 , VAL C:313 , LEU C:316 , ASP C:317 , ASP D:181 , ILE D:185BINDING SITE FOR RESIDUE 1PE C 1004
15BC6SOFTWARELYS B:173 , ARG B:174 , LYS C:173 , ILE C:176 , GLN C:178 , ASN C:179 , SER C:182 , HOH C:1155 , ILE D:104 , ARG D:106 , GLU D:166BINDING SITE FOR RESIDUE 1PE C 1005
16BC7SOFTWARELYS A:173 , SER A:175 , ILE C:104 , ARG C:106 , LYS D:173 , ILE D:176 , GLN D:178 , ASN D:179 , SER D:182 , HOH D:4103 , HOH D:4132BINDING SITE FOR RESIDUE 1PE D 4001
17BC8SOFTWARECYS D:99 , CYS D:102 , CYS D:110 , ASP D:116BINDING SITE FOR RESIDUE ZN D 4002
18BC9SOFTWAREVAL B:295 , ASN D:160 , ILE D:192 , SER D:194 , GLY D:195 , SER D:196 , GLU D:197 , ASN D:216 , ARG D:217 , HIS D:218 , TYR D:238 , THR D:252 , ASP D:255 , THR D:258 , PHE D:275 , PHE D:277 , SER D:304 , VAL D:305 , ASP D:306 , HOH D:4114 , HOH D:4158BINDING SITE FOR RESIDUE NAP D 4003
19CC1SOFTWAREARG D:95 , HIS D:126 , PHE D:128 , ARG D:130 , TYR D:134 , ASP D:135BINDING SITE FOR RESIDUE PGO D 4004
20CC2SOFTWAREASP C:181 , ILE C:185 , ILE D:137 , LEU D:140 , VAL D:141 , LYS D:142 , ASN D:144 , LYS D:309 , VAL D:313 , LEU D:316 , ASP D:317 , HOH D:4166BINDING SITE FOR RESIDUE 1PE D 4005

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WID)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Ala A:11 -Pro A:12
2Asp A:114 -Pro A:115
3Ala B:11 -Pro B:12
4Asp B:114 -Pro B:115
5Ala C:11 -Pro C:12
6Asp C:114 -Pro C:115
7Ala D:11 -Pro D:12
8Asp D:114 -Pro D:115

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WID)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WID)

(-) Exons   (0, 0)

(no "Exon" information available for 3WID)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:360
 aligned with Q979W2_THEVO | Q979W2 from UniProtKB/TrEMBL  Length:361

    Alignment length:360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
         Q979W2_THEVO     2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGTNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee...eeeeeeeee........eeeeeeeee.hhhhhhhhh..............ee...eeeeeeeee..........eeee..ee.....hhhhhhhhhh.......ee.............eeehhh.eee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee..hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhh..eeee........eeeeee...hhhhhhhhhh.eeeeeeeee.........eeehhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh.hhhhhhh.eeeee...hhhhhh.......eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wid A   2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGFNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361


Chain B from PDB  Type:PROTEIN  Length:360
 aligned with Q979W2_THEVO | Q979W2 from UniProtKB/TrEMBL  Length:361

    Alignment length:360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
         Q979W2_THEVO     2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGTNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee...eeeeeeeee........eeeeeeeee.hhhhhhhhh..............ee...eeeeeeeee..........eeee..ee.....hhhhhhhhhh.......ee.............eeehhh.eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee..hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhh..eeee........eeeeee...hhhhhhhhhh.eeeeeeeee.........eeehhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhhhh.hhhhhhh.eeeee...hhhhhh.......eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wid B   2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGFNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361


Chain C from PDB  Type:PROTEIN  Length:358
 aligned with Q979W2_THEVO | Q979W2 from UniProtKB/TrEMBL  Length:361

    Alignment length:360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
         Q979W2_THEVO     2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGTNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee...eeeeeeeee....--..eeeeeeeee.hhhhhhhhhh.............ee...eeeeeeeee..........eeee..ee.....hhhhhhhhhh.......ee.............eeehhh.eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee..hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhh..eeee........eeeeee...hhhhhhhhhh.eeeeeeeee.........eeehhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh.hhhhhhh.eeeee...hhhhhh.......eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wid C   2 STINAIVTDAPKGGVKYTKIDMPEP--YEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGFNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
                                    11        21    |  |31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
                                                   26 29                                                                                                                                                                                                                                                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:360
 aligned with Q979W2_THEVO | Q979W2 from UniProtKB/TrEMBL  Length:361

    Alignment length:360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
         Q979W2_THEVO     2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGTNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee...eeeeeeeee........eeeeeeeee.hhhhhhhhh..............ee...eeeeeeeee..........eeee..ee.....hhhhhhhhhh.......ee.............eeehhh.eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee..hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhh..eeee........eeeeee...hhhhhhhhhh.eeeeeeeee.........eeehhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh.hhhhhhh.eeeee................eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wid D   2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGFNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WID)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WID)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WID)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (Q979W2_THEVO | Q979W2)
molecular function
    GO:0070403    NAD+ binding    Interacting selectively and non-covalently with the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0070401    NADP+ binding    Interacting selectively and non-covalently with the oxidized form, NADP+, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0047936    glucose 1-dehydrogenase [NAD(P)] activity    Catalysis of the reaction: beta-D-glucose + NAD(P)+ = D-glucono-1,5-lactone + NAD(P)H.
    GO:0005536    glucose binding    Interacting selectively and non-covalently with the D- or L-enantiomer of glucose.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0019595    non-phosphorylated glucose catabolic process    The chemical reactions and pathways resulting in the breakdown of non-phosphorylated forms of glucose.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  Cis Peptide Bonds
    Ala A:11 - Pro A:12   [ RasMol ]  
    Ala B:11 - Pro B:12   [ RasMol ]  
    Ala C:11 - Pro C:12   [ RasMol ]  
    Ala D:11 - Pro D:12   [ RasMol ]  
    Asp A:114 - Pro A:115   [ RasMol ]  
    Asp B:114 - Pro B:115   [ RasMol ]  
    Asp C:114 - Pro C:115   [ RasMol ]  
    Asp D:114 - Pro D:115   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q979W2_THEVO | Q979W2: 3wic 3wie

(-) Related Entries Specified in the PDB File

3wic 3wie