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3WID
Asym. Unit
Info
Asym.Unit (250 KB)
Biol.Unit 1 (243 KB)
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(1)
Title
:
STRUCTURE OF A GLUCOSE DEHYDROGENASE T277F MUTANT IN COMPLEX WITH NADP
Authors
:
H. Sakuraba, Y. Kanoh, K. Yoneda, T. Ohshima
Date
:
10 Sep 13 (Deposition) - 14 May 14 (Release) - 14 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Rossmann Fold, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kanoh, S. Uehara, H. Iwata, K. Yoneda, T. Ohshima, H. Sakuraba
Structural Insight Into Glucose Dehydrogenase From The Thermoacidophilic Archaeon Thermoplasma Volcanium
Acta Crystallogr. , Sect. D V. 70 1271 2014
[
close entry info
]
Hetero Components
(4, 20)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
2d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
3a: S-1,2-PROPANEDIOL (PGOa)
3b: S-1,2-PROPANEDIOL (PGOb)
3c: S-1,2-PROPANEDIOL (PGOc)
3d: S-1,2-PROPANEDIOL (PGOd)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
8
Ligand/Ion
PENTAETHYLENE GLYCOL
2
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3
PGO
4
Ligand/Ion
S-1,2-PROPANEDIOL
4
ZN
4
Ligand/Ion
ZINC ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:99 , CYS A:102 , CYS A:110 , ASP A:116
BINDING SITE FOR RESIDUE ZN A 1001
02
AC2
SOFTWARE
ILE A:192 , SER A:194 , GLY A:195 , SER A:196 , GLU A:197 , ASN A:216 , ARG A:217 , HIS A:218 , TYR A:238 , THR A:252 , SER A:253 , ASP A:255 , THR A:258 , PHE A:275 , GLY A:276 , PHE A:277 , SER A:304 , VAL A:305 , ASP A:306 , HOH A:1127 , HOH A:1147 , HOH A:1167 , VAL C:295
BINDING SITE FOR RESIDUE NAP A 1002
03
AC3
SOFTWARE
ARG A:95 , LEU A:125 , HIS A:126 , ARG A:130 , TYR A:134
BINDING SITE FOR RESIDUE PGO A 1003
04
AC4
SOFTWARE
TYR A:82 , ILE A:137 , LEU A:140 , VAL A:141 , LYS A:142 , LYS A:309 , VAL A:313 , ASP B:181 , ILE B:185 , GLY B:209
BINDING SITE FOR RESIDUE 1PE A 1004
05
AC5
SOFTWARE
ARG A:106 , HOH A:1115 , LYS B:173 , GLN B:178 , SER B:182 , LYS C:173 , ARG C:174
BINDING SITE FOR RESIDUE 1PE B 4001
06
AC6
SOFTWARE
CYS B:99 , CYS B:102 , CYS B:110 , ASP B:116
BINDING SITE FOR RESIDUE ZN B 4002
07
AC7
SOFTWARE
ILE B:192 , SER B:194 , GLY B:195 , SER B:196 , GLU B:197 , ASN B:216 , ARG B:217 , HIS B:218 , TYR B:238 , THR B:252 , ASP B:255 , THR B:258 , PHE B:275 , PHE B:277 , SER B:304 , VAL B:305 , ASP B:306 , HOH B:4125 , HOH B:4129 , HOH B:4197 , VAL D:295
BINDING SITE FOR RESIDUE NAP B 4003
08
AC8
SOFTWARE
ARG B:95 , ALA B:120 , HIS B:126 , ARG B:130 , TYR B:134 , HOH B:4170
BINDING SITE FOR RESIDUE PGO B 4004
09
AC9
SOFTWARE
GLN A:178 , SER A:182 , ARG B:106 , GLU B:166 , HIS B:311 , GLN B:314 , HOH B:4119 , HOH B:4200 , ARG D:174
BINDING SITE FOR RESIDUE 1PE B 4005
10
BC1
SOFTWARE
ASP A:181 , ILE A:185 , ILE B:137 , LEU B:140 , VAL B:141 , LYS B:142 , ASN B:144 , LYS B:309 , VAL B:313 , LEU B:316 , ASP B:317 , HOH B:4145
BINDING SITE FOR RESIDUE 1PE B 4006
11
BC2
SOFTWARE
CYS C:99 , CYS C:102 , CYS C:110 , ASP C:116
BINDING SITE FOR RESIDUE ZN C 1001
12
BC3
SOFTWARE
VAL A:295 , ILE C:192 , GLY C:193 , SER C:194 , GLY C:195 , SER C:196 , GLU C:197 , ASN C:216 , ARG C:217 , HIS C:218 , TYR C:238 , THR C:252 , SER C:253 , THR C:258 , PHE C:275 , PHE C:277 , SER C:304 , VAL C:305 , ASP C:306 , LYS C:349 , HOH C:1129 , HOH C:1131 , HOH C:1147
BINDING SITE FOR RESIDUE NAP C 1002
13
BC4
SOFTWARE
ARG C:95 , HIS C:126 , ARG C:130 , TYR C:134
BINDING SITE FOR RESIDUE PGO C 1003
14
BC5
SOFTWARE
LEU C:140 , VAL C:141 , LYS C:142 , ASN C:144 , LYS C:309 , VAL C:313 , LEU C:316 , ASP C:317 , ASP D:181 , ILE D:185
BINDING SITE FOR RESIDUE 1PE C 1004
15
BC6
SOFTWARE
LYS B:173 , ARG B:174 , LYS C:173 , ILE C:176 , GLN C:178 , ASN C:179 , SER C:182 , HOH C:1155 , ILE D:104 , ARG D:106 , GLU D:166
BINDING SITE FOR RESIDUE 1PE C 1005
16
BC7
SOFTWARE
LYS A:173 , SER A:175 , ILE C:104 , ARG C:106 , LYS D:173 , ILE D:176 , GLN D:178 , ASN D:179 , SER D:182 , HOH D:4103 , HOH D:4132
BINDING SITE FOR RESIDUE 1PE D 4001
17
BC8
SOFTWARE
CYS D:99 , CYS D:102 , CYS D:110 , ASP D:116
BINDING SITE FOR RESIDUE ZN D 4002
18
BC9
SOFTWARE
VAL B:295 , ASN D:160 , ILE D:192 , SER D:194 , GLY D:195 , SER D:196 , GLU D:197 , ASN D:216 , ARG D:217 , HIS D:218 , TYR D:238 , THR D:252 , ASP D:255 , THR D:258 , PHE D:275 , PHE D:277 , SER D:304 , VAL D:305 , ASP D:306 , HOH D:4114 , HOH D:4158
BINDING SITE FOR RESIDUE NAP D 4003
19
CC1
SOFTWARE
ARG D:95 , HIS D:126 , PHE D:128 , ARG D:130 , TYR D:134 , ASP D:135
BINDING SITE FOR RESIDUE PGO D 4004
20
CC2
SOFTWARE
ASP C:181 , ILE C:185 , ILE D:137 , LEU D:140 , VAL D:141 , LYS D:142 , ASN D:144 , LYS D:309 , VAL D:313 , LEU D:316 , ASP D:317 , HOH D:4166
BINDING SITE FOR RESIDUE 1PE D 4005
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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