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(-) Description

Title :  STRUCTURE OF A SUBSTRATE/COFACTOR-UNBOUND GLUCOSE DEHYDROGENASE
 
Authors :  H. Sakuraba, Y. Kanoh, K. Yoneda, T. Ohshima
Date :  10 Sep 13  (Deposition) - 14 May 14  (Release) - 14 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Rossmann Fold, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kanoh, S. Uehara, H. Iwata, K. Yoneda, T. Ohshima, H. Sakuraba
Structural Insight Into Glucose Dehydrogenase From The Thermoacidophilic Archaeon Thermoplasma Volcanium
Acta Crystallogr. , Sect. D V. 70 1271 2014
PubMed: search  |  Reference-DOI: 10.1107/S1399004714002363

(-) Compounds

Molecule 1 - GLUCOSE 1-DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.1.1.47
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GDH, TV1048, TVG1073292
    Organism Scientific: THERMOPLASMA VOLCANIUM
    Organism Taxid: 273116
    Strain: ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1
    Synonym: GDH, GLCDH

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 22)

Asymmetric/Biological Unit (3, 22)
No.NameCountTypeFull Name
11PE8Ligand/IonPENTAETHYLENE GLYCOL
2PGO6Ligand/IonS-1,2-PROPANEDIOL
3ZN8Ligand/IonZINC ION

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:41 , HIS A:68 , GLU A:69BINDING SITE FOR RESIDUE ZN A 1001
02AC2SOFTWARECYS A:99 , CYS A:102 , CYS A:110 , ASP A:116BINDING SITE FOR RESIDUE ZN A 1002
03AC3SOFTWAREARG A:95 , HIS A:126 , ARG A:130 , ILE A:133 , TYR A:134BINDING SITE FOR RESIDUE PGO A 1003
04AC4SOFTWAREILE A:104 , ARG A:106 , HOH A:1110 , GLN B:178 , LYS C:173BINDING SITE FOR RESIDUE 1PE A 1004
05AC5SOFTWAREILE A:137 , LEU A:140 , LYS A:142 , ASN A:144 , LYS A:309 , VAL A:313 , ASP B:181 , ILE B:185BINDING SITE FOR RESIDUE 1PE A 1005
06AC6SOFTWARECYS B:41 , HIS B:68 , GLU B:69 , HOH B:1106BINDING SITE FOR RESIDUE ZN B 1001
07AC7SOFTWARECYS B:99 , CYS B:102 , CYS B:110 , ASP B:116BINDING SITE FOR RESIDUE ZN B 1002
08AC8SOFTWAREARG B:95 , HIS B:126 , ARG B:130 , ILE B:133 , TYR B:134 , ASP B:135BINDING SITE FOR RESIDUE PGO B 1003
09AC9SOFTWAREPHE B:88 , ASP B:145 , PRO B:146 , LEU B:148 , GLY B:149 , HOH B:1148BINDING SITE FOR RESIDUE PGO B 1004
10BC1SOFTWAREGLN A:178 , HOH A:1143 , ARG B:106 , GLU B:166 , HIS B:311 , HOH B:1141 , LYS D:173 , ARG D:174BINDING SITE FOR RESIDUE 1PE B 1005
11BC2SOFTWAREILE A:185 , TYR B:82 , ILE B:137 , GLN B:138 , LEU B:140 , VAL B:141 , LYS B:142 , ASN B:144 , LYS B:309BINDING SITE FOR RESIDUE 1PE B 1006
12BC3SOFTWARELYS B:173 , ARG B:174 , HOH B:1107 , HOH B:1139 , LYS C:173 , ILE C:176 , GLN C:178 , ASN C:179 , ILE D:104 , ARG D:106 , HOH D:1119BINDING SITE FOR RESIDUE 1PE B 1007
13BC4SOFTWARECYS C:41 , HIS C:68 , GLU C:69 , GLU C:156BINDING SITE FOR RESIDUE ZN C 1001
14BC5SOFTWARECYS C:99 , CYS C:102 , CYS C:110 , ASP C:116BINDING SITE FOR RESIDUE ZN C 1002
15BC6SOFTWAREARG C:95 , HIS C:126 , ARG C:130 , ILE C:133 , TYR C:134 , HOH C:1109BINDING SITE FOR RESIDUE PGO C 1003
16BC7SOFTWARELYS A:173 , ARG A:174 , HOH A:1115 , ILE C:104 , LYS C:173 , HOH C:1160 , LYS D:173 , ILE D:176 , GLN D:178 , ASN D:179 , SER D:182BINDING SITE FOR RESIDUE 1PE C 1004
17BC8SOFTWARETYR C:82 , ILE C:137 , LEU C:140 , VAL C:141 , LYS C:142 , LYS C:309 , HOH C:1151 , ASP D:181 , ILE D:185BINDING SITE FOR RESIDUE 1PE C 1005
18BC9SOFTWARECYS D:41 , HIS D:68 , GLU D:69 , GLU D:156BINDING SITE FOR RESIDUE ZN D 1001
19CC1SOFTWARECYS D:99 , CYS D:102 , CYS D:110 , ASP D:116BINDING SITE FOR RESIDUE ZN D 1002
20CC2SOFTWAREALA D:120 , HIS D:126 , PHE D:128 , ARG D:130 , TYR D:134 , ASP D:135BINDING SITE FOR RESIDUE PGO D 1003
21CC3SOFTWAREPHE D:88 , ASP D:145 , PRO D:146 , LEU D:148 , GLY D:149BINDING SITE FOR RESIDUE PGO D 1004
22CC4SOFTWAREASN C:179 , ASP C:181 , ILE D:137 , LEU D:140 , LYS D:142 , ASN D:144 , LYS D:309 , VAL D:313 , ASP D:317 , HOH D:1155BINDING SITE FOR RESIDUE 1PE D 1005

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WIC)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Ala A:11 -Pro A:12
2Asp A:114 -Pro A:115
3Ala B:11 -Pro B:12
4Asp B:114 -Pro B:115
5Ala C:11 -Pro C:12
6Asp C:114 -Pro C:115
7Ala D:11 -Pro D:12
8Asp D:114 -Pro D:115

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WIC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WIC)

(-) Exons   (0, 0)

(no "Exon" information available for 3WIC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:360
 aligned with Q979W2_THEVO | Q979W2 from UniProtKB/TrEMBL  Length:361

    Alignment length:360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
         Q979W2_THEVO     2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGTNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee...eeeeeeeee........eeeeeeeeeehhhhhhhhh..............ee...eeeeeeeee..........eeee..ee.....hhhhhhhhhh.......ee.............eeehhh.eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee..hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhh..eeee........eeeeee...hhhhhhhhhh.eeeeeeeee.........eeehhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh.......eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wic A   2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGTNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361


Chain B from PDB  Type:PROTEIN  Length:360
 aligned with Q979W2_THEVO | Q979W2 from UniProtKB/TrEMBL  Length:361

    Alignment length:360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
         Q979W2_THEVO     2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGTNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee...eeeeeeeee........eeeeeeeeeehhhhhhhhh..............ee...eeeeeeeee..........eeee..ee.....hhhhhhhhhh.......ee.............eeehhh.eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee..hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhh..eeee........eeeeee...hhhhhhhhhh.eeeeeeeee.........eeehhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh.......eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wic B   2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGTNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361


Chain C from PDB  Type:PROTEIN  Length:360
 aligned with Q979W2_THEVO | Q979W2 from UniProtKB/TrEMBL  Length:361

    Alignment length:360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
         Q979W2_THEVO     2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGTNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee...eeeeeeeee........eeeeeeeee.hhhhhhhhhh.............ee...eeeeeeeee..........eeee..ee.....hhhhhhhhhh.......ee.............eeehhh.eee.....hhhhhhhhhhhhhhhhhhhhhhhhh...............eeeee..hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhh..eeee........eeeeee...hhhhhhhhhh.eeeeeeeee.........eeehhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh.hhhhhhhheeeee...hhhhhh.......eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wic C   2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGTNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361


Chain D from PDB  Type:PROTEIN  Length:360
 aligned with Q979W2_THEVO | Q979W2 from UniProtKB/TrEMBL  Length:361

    Alignment length:360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
         Q979W2_THEVO     2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGTNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee...eeeeeeeee........eeeeeeeee.hhhhhhhhh..............ee...eeeeeeeee..........eeee..ee.....hhhhhhhhhh.......ee.............eeehhh.eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee..hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhh..eeee........eeeeee...hhhhhhhhhh.eeeeeeeee.........eeehhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh.hhhhhhhheeeee...hhhhhh.......eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wic D   2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGTNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WIC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WIC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WIC)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (Q979W2_THEVO | Q979W2)
molecular function
    GO:0070403    NAD+ binding    Interacting selectively and non-covalently with the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0070401    NADP+ binding    Interacting selectively and non-covalently with the oxidized form, NADP+, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0047936    glucose 1-dehydrogenase [NAD(P)] activity    Catalysis of the reaction: beta-D-glucose + NAD(P)+ = D-glucono-1,5-lactone + NAD(P)H.
    GO:0005536    glucose binding    Interacting selectively and non-covalently with the D- or L-enantiomer of glucose.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0019595    non-phosphorylated glucose catabolic process    The chemical reactions and pathways resulting in the breakdown of non-phosphorylated forms of glucose.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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    Asp D:114 - Pro D:115   [ RasMol ]  
 

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Access by PDB/NDB ID
  3wic
    Family and Domain Information: ProDom | SYSTERS
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  Q979W2_THEVO | Q979W2
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  1.1.1.47
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  Q979W2_THEVO | Q979W2
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        Q979W2_THEVO | Q979W2: 3wid 3wie

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3wid 3wie