Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF A GLUCOSE DEHYDROGENASE T277F MUTANT IN COMPLEX WITH D-GLUCOSE AND NAADP
 
Authors :  H. Sakuraba, Y. Kanoh, K. Yoneda, T. Ohshima
Date :  10 Sep 13  (Deposition) - 14 May 14  (Release) - 14 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.33
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Rossmann Fold, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kanoh, S. Uehara, H. Iwata, K. Yoneda, T. Ohshima, H. Sakuraba
Structural Insight Into Glucose Dehydrogenase From The Thermoacidophilic Archaeon Thermoplasma Volcanium
Acta Crystallogr. , Sect. D V. 70 1271 2014
PubMed: search  |  Reference-DOI: 10.1107/S1399004714002363

(-) Compounds

Molecule 1 - GLUCOSE 1-DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.1.1.47
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GDH, TV1048, TVG1073292
    Mutation: YES
    Organism Scientific: THERMOPLASMA VOLCANIUM
    Organism Taxid: 273116
    Strain: ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1
    Synonym: GDH, GLCDH

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric/Biological Unit (3, 16)
No.NameCountTypeFull Name
1BGC4Ligand/IonBETA-D-GLUCOSE
2DN44Ligand/Ion[[(2R,3R,4R,5R)-5-(6-AMINOPURIN-9-YL)-3-OXIDANYL-4-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL][(2R,3S,4R,5R)-5-(3-CARBOXYPYRIDIN-1-IUM-1-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL PHOSPHATE
3ZN8Ligand/IonZINC ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:41 , HIS A:68 , GLU A:69 , BGC A:1004 , HOH A:1160BINDING SITE FOR RESIDUE ZN A 1001
02AC2SOFTWARECYS A:99 , CYS A:102 , CYS A:110 , ASP A:116BINDING SITE FOR RESIDUE ZN A 1002
03AC3SOFTWAREASN A:160 , ILE A:192 , GLY A:193 , SER A:194 , GLY A:195 , SER A:196 , GLU A:197 , ASN A:216 , ARG A:217 , HIS A:218 , TYR A:238 , THR A:252 , SER A:253 , THR A:258 , PHE A:275 , GLY A:276 , PHE A:277 , SER A:304 , VAL A:305 , ASP A:306 , BGC A:1004 , HOH A:1149 , VAL C:295BINDING SITE FOR RESIDUE DN4 A 1003
04AC4SOFTWARETHR A:43 , HIS A:68 , ARG A:94 , GLU A:119 , GLU A:156 , LYS A:159 , ASN A:160 , PHE A:277 , ASP A:306 , ZN A:1001 , DN4 A:1003 , HOH A:1160BINDING SITE FOR RESIDUE BGC A 1004
05AC5SOFTWARECYS B:41 , HIS B:68 , GLU B:69 , BGC B:1004 , HOH B:1155BINDING SITE FOR RESIDUE ZN B 1001
06AC6SOFTWARECYS B:99 , CYS B:102 , CYS B:110 , ASP B:116BINDING SITE FOR RESIDUE ZN B 1002
07AC7SOFTWAREASN B:160 , ILE B:192 , GLY B:193 , SER B:194 , GLY B:195 , SER B:196 , GLU B:197 , ASN B:216 , ARG B:217 , HIS B:218 , TYR B:238 , THR B:252 , SER B:253 , THR B:258 , PHE B:275 , GLY B:276 , PHE B:277 , SER B:304 , VAL B:305 , ASP B:306 , LYS B:349 , BGC B:1004 , HOH B:1121 , VAL D:295BINDING SITE FOR RESIDUE DN4 B 1003
08AC8SOFTWARETHR B:43 , HIS B:68 , VAL B:93 , ARG B:94 , GLU B:119 , GLU B:156 , LYS B:159 , ASN B:160 , ASP B:306 , ZN B:1001 , DN4 B:1003 , GLU D:296BINDING SITE FOR RESIDUE BGC B 1004
09AC9SOFTWARECYS C:41 , HIS C:68 , GLU C:69 , BGC C:1004 , HOH C:1142BINDING SITE FOR RESIDUE ZN C 1001
10BC1SOFTWARECYS C:99 , CYS C:102 , CYS C:110 , ASP C:116BINDING SITE FOR RESIDUE ZN C 1002
11BC2SOFTWAREVAL A:295 , ASN C:160 , GLY C:193 , SER C:194 , GLY C:195 , SER C:196 , GLU C:197 , ASN C:216 , ARG C:217 , HIS C:218 , TYR C:238 , THR C:252 , SER C:253 , THR C:258 , PHE C:275 , PHE C:277 , SER C:304 , VAL C:305 , ASP C:306 , BGC C:1004 , HOH C:1126 , HOH C:1135BINDING SITE FOR RESIDUE DN4 C 1003
12BC3SOFTWARETHR C:43 , VAL C:93 , ARG C:94 , GLU C:119 , GLU C:156 , LYS C:159 , ASN C:160 , ASP C:306 , ZN C:1001 , DN4 C:1003BINDING SITE FOR RESIDUE BGC C 1004
13BC4SOFTWARECYS D:41 , HIS D:68 , GLU D:69 , BGC D:1004 , HOH D:1144BINDING SITE FOR RESIDUE ZN D 1001
14BC5SOFTWARECYS D:99 , CYS D:102 , CYS D:110 , ASP D:116BINDING SITE FOR RESIDUE ZN D 1002
15BC6SOFTWAREVAL B:295 , ASN D:160 , ILE D:192 , GLY D:193 , SER D:194 , GLY D:195 , SER D:196 , GLU D:197 , ASN D:216 , ARG D:217 , HIS D:218 , TYR D:238 , THR D:252 , THR D:258 , PHE D:275 , GLY D:276 , PHE D:277 , SER D:304 , VAL D:305 , ASP D:306 , BGC D:1004BINDING SITE FOR RESIDUE DN4 D 1003
16BC7SOFTWARETHR D:43 , HIS D:68 , GLU D:119 , GLU D:156 , LYS D:159 , ASN D:160 , PHE D:277 , ASP D:306 , ZN D:1001 , DN4 D:1003BINDING SITE FOR RESIDUE BGC D 1004

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WIE)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Ala A:11 -Pro A:12
2Asp A:114 -Pro A:115
3Ala B:11 -Pro B:12
4Asp B:114 -Pro B:115
5Ala C:11 -Pro C:12
6Asp C:114 -Pro C:115
7Ala D:11 -Pro D:12
8Asp D:114 -Pro D:115

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WIE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WIE)

(-) Exons   (0, 0)

(no "Exon" information available for 3WIE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:360
 aligned with Q979W2_THEVO | Q979W2 from UniProtKB/TrEMBL  Length:361

    Alignment length:360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
         Q979W2_THEVO     2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGTNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee...eeeeeeeee........eeeeeeeee.hhhhhhhhh..............ee...eeeeeeeee..........eeee..ee.....hhhhhhhhhh.......ee.............eeehhh.eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee..hhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhh..eeee........eeeeee...hhhhhhhhhh.eeeeeeeee.........eeehhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh.hhhhhhh.eeeee...hhhhhh.......eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wie A   2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGFNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361


Chain B from PDB  Type:PROTEIN  Length:360
 aligned with Q979W2_THEVO | Q979W2 from UniProtKB/TrEMBL  Length:361

    Alignment length:360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
         Q979W2_THEVO     2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGTNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee...eeeeeeeee........eeeeeeeee.hhhhhhhhh..............ee...eeeeeeeee..........eeee..ee.....hhhhhhhhhh.......ee.............eeehhh.eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee..hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhh..eeee........eeeeee...hhhhhhhhhh.eeeeeeeee.........eeehhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh.hhhhhhh.eeeee...hhhhhh.......eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wie B   2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGFNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361


Chain C from PDB  Type:PROTEIN  Length:360
 aligned with Q979W2_THEVO | Q979W2 from UniProtKB/TrEMBL  Length:361

    Alignment length:360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
         Q979W2_THEVO     2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGTNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee...eeeeeeeee........eeeeeeeee.hhhhhhhhh..............ee...eeeeeeeee..........eeee..ee.....hhhhhhhhhh.......ee.............eeehhh.eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee..hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhh.eeee........eeeeee...hhhhhhhhhh.eeeeeeeee.........eeehhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh.......eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wie C   2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGFNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361


Chain D from PDB  Type:PROTEIN  Length:360
 aligned with Q979W2_THEVO | Q979W2 from UniProtKB/TrEMBL  Length:361

    Alignment length:360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
         Q979W2_THEVO     2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGTNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.......eeeeee........eeeeeeeeeehhhhhhhhhh.............ee...eeeeeeeee..........eeee..ee.....hhhhhhhhhh.......ee.............eeehhh.eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee..hhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhh.eeee........eeeeee...hhhhhhhhhh.eeeeeeeee.........eeehhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh.hhhhhhh.eeeee................eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wie D   2 STINAIVTDAPKGGVKYTKIDMPEPEKYEAKLKPVYIGICGTDRGEVAGALSFTYNPEGENFLVLGHEALLQVLDVSDNNYIKRGDFVVPLVRRPGKCVNCRIGRQDNCSIGDPDKHEAGITGLHGFMRDVIYDDIQNLVKVNDPDLGKIAVLTEPLKNVMKAFEVFDVVSKRSIFQNDDSTFIGKKMVVIGSGSEAFLYSFVGKDRGFDVTMVNRHDETENKMKMMDDFGVGFSNYLKDMPDKIDLLVDTSGDPSTIFKFVKKVNNNGVVILFGFNGKAPGYPVNGEDIDYIVERNITIAGSVDAAKIHYVQALDSLSNWYHRHPQTIKDIITYEAKPEETNIFFQKPKGEIKTVIKWP 361
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WIE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WIE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WIE)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (Q979W2_THEVO | Q979W2)
molecular function
    GO:0070403    NAD+ binding    Interacting selectively and non-covalently with the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0070401    NADP+ binding    Interacting selectively and non-covalently with the oxidized form, NADP+, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0047936    glucose 1-dehydrogenase [NAD(P)] activity    Catalysis of the reaction: beta-D-glucose + NAD(P)+ = D-glucono-1,5-lactone + NAD(P)H.
    GO:0005536    glucose binding    Interacting selectively and non-covalently with the D- or L-enantiomer of glucose.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0019595    non-phosphorylated glucose catabolic process    The chemical reactions and pathways resulting in the breakdown of non-phosphorylated forms of glucose.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    BGC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DN4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ZN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:11 - Pro A:12   [ RasMol ]  
    Ala B:11 - Pro B:12   [ RasMol ]  
    Ala C:11 - Pro C:12   [ RasMol ]  
    Ala D:11 - Pro D:12   [ RasMol ]  
    Asp A:114 - Pro A:115   [ RasMol ]  
    Asp B:114 - Pro B:115   [ RasMol ]  
    Asp C:114 - Pro C:115   [ RasMol ]  
    Asp D:114 - Pro D:115   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3wie
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q979W2_THEVO | Q979W2
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  1.1.1.47
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q979W2_THEVO | Q979W2
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q979W2_THEVO | Q979W2: 3wic 3wid

(-) Related Entries Specified in the PDB File

3wic 3wid