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3V38
Biol. Unit 1
Info
Asym.Unit (139 KB)
Biol.Unit 1 (781 KB)
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(1)
Title
:
CARBOXYPEPTIDASE T MUTANT L254N
Authors
:
V. I. Timofeev, S. A. Kuznetsov, V. K. Akparov, I. P. Kuranova
Date
:
13 Dec 11 (Deposition) - 19 Dec 12 (Release) - 19 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (6x)
Keywords
:
Peptidase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. I. Timofeev, S. A. Kuznetsov, V. K. Akparov, I. P. Kuranova
Carboxypeptidase T Mutant L254N
To Be Published
[
close entry info
]
Hetero Components
(2, 168)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
1s: GLYCEROL (GOLs)
1t: GLYCEROL (GOLt)
1u: GLYCEROL (GOLu)
1v: GLYCEROL (GOLv)
1w: GLYCEROL (GOLw)
1x: GLYCEROL (GOLx)
1y: GLYCEROL (GOLy)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
3a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
150
Ligand/Ion
GLYCEROL
2
SO4
18
Ligand/Ion
SULFATE ION
3
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:69 , GLU A:72 , HIS A:204 , HOH A:544
BINDING SITE FOR RESIDUE ZN A 401
02
AC2
SOFTWARE
HIS A:69 , ARG A:129 , ASN A:146 , ARG A:147 , TYR A:255 , GLU A:277 , GOL A:404 , GOL A:408 , HOH A:544
BINDING SITE FOR RESIDUE SO4 A 402
03
AC3
SOFTWARE
TYR A:212 , ASP A:220 , PHE A:230 , LYS A:234 , HOH A:560 , HOH A:648
BINDING SITE FOR RESIDUE SO4 A 403
04
AC4
SOFTWARE
ASN A:146 , LEU A:211 , ALA A:251 , TYR A:255 , THR A:257 , ASP A:260 , THR A:275 , GLU A:277 , SO4 A:402 , HOH A:580 , HOH A:616 , HOH A:633
BINDING SITE FOR RESIDUE GOL A 404
05
AC5
SOFTWARE
GLY A:193 , GLN A:195 , HIS A:269 , HOH A:685 , HOH A:756
BINDING SITE FOR RESIDUE GOL A 405
06
AC6
SOFTWARE
ARG A:71 , LYS A:152 , GLU A:166 , TYR A:216 , GOL A:409 , GOL A:425
BINDING SITE FOR RESIDUE GOL A 406
07
AC7
SOFTWARE
GLY A:137 , SER A:138 , SER A:139 , TYR A:140 , ARG A:171 , SER A:172 , HOH A:615
BINDING SITE FOR RESIDUE GOL A 407
08
AC8
SOFTWARE
ARG A:129 , THR A:205 , TYR A:206 , TYR A:255 , GLU A:277 , PHE A:287 , SO4 A:402 , HOH A:507 , HOH A:796 , HOH A:797
BINDING SITE FOR RESIDUE GOL A 408
09
AC9
SOFTWARE
ARG A:71 , GLU A:166 , GOL A:406 , HOH A:551 , HOH A:604 , HOH A:801
BINDING SITE FOR RESIDUE GOL A 409
10
BC1
SOFTWARE
PHE A:174 , ARG A:183 , ASN A:187 , TRP A:264 , GLN A:268 , HOH A:640 , HOH A:787
BINDING SITE FOR RESIDUE SO4 A 410
11
BC2
SOFTWARE
PRO A:3 , SER A:4 , TYR A:5 , HOH A:708
BINDING SITE FOR RESIDUE GOL A 411
12
BC3
SOFTWARE
LYS A:48 , GLY A:54 , THR A:55 , ASP A:56 , ARG A:189 , GOL A:413 , HOH A:653
BINDING SITE FOR RESIDUE GOL A 412
13
BC4
SOFTWARE
LYS A:31 , PHE A:33 , TYR A:106 , GOL A:412 , HOH A:554
BINDING SITE FOR RESIDUE GOL A 413
14
BC5
SOFTWARE
ASN A:98 , ASN A:102 , ARG A:103
BINDING SITE FOR RESIDUE GOL A 414
15
BC6
SOFTWARE
VAL A:16 , ASN A:20 , THR A:21 , ASN A:25 , LYS A:32 , TRP A:45 , HOH A:502
BINDING SITE FOR RESIDUE GOL A 415
16
BC7
SOFTWARE
TYR A:39 , GLU A:40 , HOH A:625 , HOH A:692 , HOH A:715
BINDING SITE FOR RESIDUE GOL A 416
17
BC8
SOFTWARE
ASN A:28 , LYS A:31 , LYS A:32 , PHE A:33 , HOH A:773
BINDING SITE FOR RESIDUE GOL A 417
18
BC9
SOFTWARE
ASN A:11 , ASN A:13 , GLU A:14 , GOL A:419 , HOH A:569
BINDING SITE FOR RESIDUE GOL A 418
19
CC1
SOFTWARE
GLU A:14 , ASN A:17 , GOL A:418
BINDING SITE FOR RESIDUE GOL A 419
20
CC2
SOFTWARE
ARG A:95 , GLU A:303
BINDING SITE FOR RESIDUE GOL A 420
21
CC3
SOFTWARE
THR A:239 , TYR A:307 , GLU A:310 , LYS A:311 , VAL A:318 , HOH A:704 , HOH A:799
BINDING SITE FOR RESIDUE GOL A 421
22
CC4
SOFTWARE
ASP A:93 , ARG A:95 , LYS A:302
BINDING SITE FOR RESIDUE GOL A 422
23
CC5
SOFTWARE
ARG A:132 , HOH A:528 , HOH A:619 , HOH A:783
BINDING SITE FOR RESIDUE GOL A 423
24
CC6
SOFTWARE
TYR A:12 , ARG A:42 , GLU A:117 , HOH A:663 , HOH A:776
BINDING SITE FOR RESIDUE GOL A 424
25
CC7
SOFTWARE
SER A:127 , LYS A:152 , TYR A:216 , PRO A:222 , SER A:223 , ASP A:224 , GOL A:406 , HOH A:545 , HOH A:768
BINDING SITE FOR RESIDUE GOL A 425
26
CC8
SOFTWARE
SER A:223 , HOH A:588 , HOH A:687 , HOH A:724 , HOH A:759 , HOH A:769 , HOH A:790
BINDING SITE FOR RESIDUE GOL A 426
27
CC9
SOFTWARE
GLN A:249 , ASN A:254
BINDING SITE FOR RESIDUE GOL A 427
28
DC1
SOFTWARE
TRP A:128 , TYR A:140 , VAL A:141 , HOH A:541 , HOH A:584
BINDING SITE FOR RESIDUE GOL A 428
29
DC2
SOFTWARE
TYR A:81 , GLY A:295 , SER A:299 , HOH A:791
BINDING SITE FOR RESIDUE GOL A 429
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: CARBOXYPEPT_ZN_1 (A:60-82)
2: CARBOXYPEPT_ZN_2 (A:204-214)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBOXYPEPT_ZN_1
PS00132
Zinc carboxypeptidases, zinc-binding region 1 signature.
CBPT_THEVU
158-180
6
A:60-82
2
CARBOXYPEPT_ZN_2
PS00133
Zinc carboxypeptidases, zinc-binding region 2 signature.
CBPT_THEVU
302-312
6
A:204-214
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3v38a_ (A:)
View:
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Classes
(
)
(
)
Folds
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(
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Superfamilies
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(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
Carboxypeptidase T
(12)
Protein domain
:
Carboxypeptidase T
(12)
Thermoactinomyces vulgaris [TaxId: 2026]
(12)
1a
d3v38a_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
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)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
Asymmetric Unit 5
Asymmetric Unit 6
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