3UVC - JenaLib

Asymmetric Unit (27, 27)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:218 , HIS A:222 , HIS A:228 , 0D2 A:314	BINDING SITE FOR RESIDUE ZN A 301
02	AC2	SOFTWARE	HIS A:168 , ASP A:170 , HIS A:183 , HIS A:196	BINDING SITE FOR RESIDUE ZN A 302
03	AC3	SOFTWARE	ASP A:124 , GLU A:199 , GLU A:201 , HOH A:414 , HOH A:431	BINDING SITE FOR RESIDUE CA A 303
04	AC4	SOFTWARE	ASP A:158 , GLY A:190 , GLY A:192 , ASP A:194 , HOH A:402 , HOH A:444	BINDING SITE FOR RESIDUE CA A 304
05	AC5	SOFTWARE	ASP A:175 , GLY A:176 , GLY A:178 , ILE A:180 , ASP A:198 , GLU A:201	BINDING SITE FOR RESIDUE CA A 305
06	AC6	SOFTWARE	HIS A:172 , IMD A:307 , HIS B:228 , CL B:301	BINDING SITE FOR RESIDUE ZN A 306
07	AC7	SOFTWARE	HIS A:172 , ZN A:306 , 0D2 A:314 , HOH A:464 , HIS B:228 , PRO B:238 , CL B:301	BINDING SITE FOR RESIDUE IMD A 307
08	AC8	SOFTWARE	GLY A:169 , ASP A:170 , PHE A:171 , IMD A:313 , HOH A:418 , HIS B:172 , ZN B:308 , IMD B:309	BINDING SITE FOR RESIDUE IMD A 312
09	AC9	SOFTWARE	SER A:142 , THR A:145 , HOH A:401 , HOH A:410 , HOH A:427 , HOH A:428 , HOH A:446	BINDING SITE FOR RESIDUE CA A 308
10	BC1	SOFTWARE	ASN A:120 , TYR A:121 , ARG A:127	BINDING SITE FOR RESIDUE CL A 309
11	BC2	SOFTWARE	HOH A:609 , LYS B:151 , ASN B:153 , HOH B:557	BINDING SITE FOR RESIDUE CL A 310
12	BC3	SOFTWARE	ARG A:135 , SER A:150 , LYS A:151 , ASN B:153 , THR B:154	BINDING SITE FOR RESIDUE CL A 311
13	BC4	SOFTWARE	GLY A:169 , IMD A:312 , HOH A:469 , HOH A:660 , HOH A:667 , HIS B:172 , ZN B:308 , IMD B:309 , HOH B:446	BINDING SITE FOR RESIDUE IMD A 313
14	BC5	SOFTWARE	GLY A:179 , ILE A:180 , LEU A:181 , ALA A:182 , HIS A:218 , HIS A:222 , HIS A:228 , PRO A:238 , TYR A:240 , ZN A:301 , IMD A:307 , HOH A:413 , HOH A:435 , HOH A:498 , SER B:229 , SER B:230 , PRO B:238	BINDING SITE FOR RESIDUE 0D2 A 314
15	BC6	SOFTWARE	LEU A:214 , THR A:239 , TYR A:240 , LYS A:241 , HOH A:425 , HOH A:572	BINDING SITE FOR RESIDUE EDO A 315
16	BC7	SOFTWARE	HIS A:172 , ZN A:306 , IMD A:307 , HIS B:228	BINDING SITE FOR RESIDUE CL B 301
17	BC8	SOFTWARE	ASN B:120 , TYR B:121 , ARG B:127 , HOH B:616	BINDING SITE FOR RESIDUE CL B 302
18	BC9	SOFTWARE	HIS B:218 , HIS B:222 , HIS B:228 , IMD B:311	BINDING SITE FOR RESIDUE ZN B 303
19	CC1	SOFTWARE	HIS B:168 , ASP B:170 , HIS B:183 , HIS B:196	BINDING SITE FOR RESIDUE ZN B 304
20	CC2	SOFTWARE	ASP B:124 , GLU B:199 , GLU B:201 , HOH B:417 , HOH B:423	BINDING SITE FOR RESIDUE CA B 305
21	CC3	SOFTWARE	ASP B:158 , GLY B:190 , GLY B:192 , ASP B:194 , HOH B:408 , HOH B:412	BINDING SITE FOR RESIDUE CA B 306
22	CC4	SOFTWARE	ASP B:175 , GLY B:176 , GLY B:178 , ILE B:180 , ASP B:198 , GLU B:201	BINDING SITE FOR RESIDUE CA B 307
23	CC5	SOFTWARE	IMD A:312 , IMD A:313 , HOH A:469 , HIS B:172 , IMD B:309 , HOH B:446	BINDING SITE FOR RESIDUE ZN B 308
24	CC6	SOFTWARE	IMD A:312 , IMD A:313 , ASP B:170 , HIS B:172 , PHE B:185 , ILE B:191 , ZN B:308 , HOH B:446	BINDING SITE FOR RESIDUE IMD B 309
25	CC7	SOFTWARE	ARG B:110 , HOH B:463	BINDING SITE FOR RESIDUE CL B 310
26	CC8	SOFTWARE	ALA B:182 , HIS B:218 , HIS B:222 , HIS B:228 , ZN B:303 , EDO B:312 , HOH B:442	BINDING SITE FOR RESIDUE IMD B 311
27	CC9	SOFTWARE	HIS B:218 , PRO B:238 , TYR B:240 , IMD B:311 , HOH B:407 , HOH B:581	BINDING SITE FOR RESIDUE EDO B 312

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:158
 aligned with MMP12_HUMAN | P39900 from UniProtKB/Swiss-Prot  Length:470

    Alignment length:158
                                   115       125       135       145       155       165       175       185       195       205       215       225       235       245       255        
          MMP12_HUMAN   106 GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 263
               SCOP domains d3uvca_ A: automated matches                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee....ee.....eehhhhhhhhhhhhh...................hhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------ZINC_PROTE--------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uvc A 106 GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHAIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 263
                                   115       125       135       145       155       165       175       185       195       205       215       225       235       245       255

Chain B from PDB  Type:PROTEIN  Length:159
 aligned with MMP12_HUMAN | P39900 from UniProtKB/Swiss-Prot  Length:470

    Alignment length:159
                                   114       124       134       144       154       164       174       184       194       204       214       224       234       244       254         
          MMP12_HUMAN   105 GGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 263
               SCOP domains d3uvcb_ B: automated matches                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee....ee.....eehhhhhhhhhhhhh..........................hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------ZINC_PROTE--------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uvc B 105 MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHAIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 263
                                   114       124       134       144       154       164       174       184       194       204       214       224       234       244       254

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (21, 21)

Asymmetric Unit(hide GO term definitions)

Chain A,B (MMP12_HUMAN | P39900)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0004175	endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004222	metalloendopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008237	metallopeptidase activity	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0030574	collagen catabolic process	The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells.
	GO:0022617	extracellular matrix disassembly	A process that results in the breakdown of the extracellular matrix.
	GO:0050679	positive regulation of epithelial cell proliferation	Any process that activates or increases the rate or extent of epithelial cell proliferation.
	GO:0060054	positive regulation of epithelial cell proliferation involved in wound healing	Any process that activates or increases the rate or extent of epithelial cell proliferation, contributing to the restoration of integrity to a damaged tissue following an injury.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0042493	response to drug	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
	GO:0014070	response to organic cyclic compound	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
	GO:0042060	wound healing	The series of events that restore integrity to a damaged tissue, following an injury.
	GO:0035313	wound healing, spreading of epidermal cells	The migration of an epidermal cell along or through a wound gap that contributes to the reestablishment of a continuous epidermis.
cellular component
	GO:0031012	extracellular matrix	A structure lying external to one or more cells, which provides structural support for cells or tissues.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005578	proteinaceous extracellular matrix	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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	Cis Peptide Bonds
		Gly A:106 - Pro A:107	[ RasMol ]

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	3uvc
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	MMP12_HUMAN \| P39900
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	3.4.24.65
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 27)

Sites (27, 27)