2MLS - JenaLib

NMR Structure - model 1 (Jmol Viewer)

NMR Structure - model 1, sites (Jmol Viewer)

NMR Structure - all models (Jmol Viewer)

Title :   MEMBRANE BILAYER COMPLEX WITH MATRIX METALLOPROTEINASE-12 AT ITS BETA-FACE

Authors :   R. K. Koppisetti, Y. G. Fulcher, S. H. Prior, M. Lenoir, M. Overduin, S. R Doren

Date :   04 Mar 14 (Deposition) - 03 Dec 14 (Release) - 10 Dec 14 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (14x)
NMR Structure *: A  (1x)

Keywords :   Membrane-Binding Of Soluble Metalloproteinase Mmp-12, Catalytic Domain, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. K. Koppisetti, Y. G. Fulcher, A. Jurkevich, S. H. Prior, J. Xu, M. Lenoir, M. Overduin, S. R. Van Doren
Ambidextrous Binding Of Cell And Membrane Bilayers By Soluble Matrix Metalloproteinase-12.
Nat Commun V. 5 5552 2014
PubMed-ID: 25412686 | Reference-DOI: 10.1038/NCOMMS6552

Molecule 1 - MACROPHAGE METALLOELASTASE
	Chains	:	A
	EC Number	:	3.4.24.65
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21 (DE3) RIL
	Expression System Taxid	:	562
	Expression System Vector	:	PET 21A
	Gene	:	MMP12, HME
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	MME, MACROPHAGE ELASTASE, ME, HME, MATRIX METALLOPROTEINASE- 12, MMP-12

		1
NMR Structure (14x)	:	A
NMR Structure * (1x)	:	A

Summary Information (see also Sequences/Alignments below)

NMR Structure (3, 130)

No.	Name	Count	Type	Full Name
1	CA	3	Ligand/Ion	CALCIUM ION
2	PX4	125	Ligand/Ion	1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
3	ZN	2	Ligand/Ion	ZINC ION

NMR Structure * (1, 125)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	PX4	125	Ligand/Ion	1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
3	ZN	-1	Ligand/Ion	ZINC ION

NMR Structure (130, 130)

No.	Name	Evidence	Residues	Description
001	AC1	SOFTWARE	HIS A:218	BINDING SITE FOR RESIDUE ZN A 301
002	AC2	SOFTWARE	HIS A:168 , ASP A:170 , HIS A:172 , HIS A:183	BINDING SITE FOR RESIDUE ZN A 302
003	AC3	SOFTWARE	ASP A:175 , GLY A:176 , GLY A:178 , ILE A:180 , ASP A:198 , GLU A:201	BINDING SITE FOR RESIDUE CA A 303
004	AC4	SOFTWARE	ASP A:158 , GLY A:190 , GLY A:192 , ASP A:194	BINDING SITE FOR RESIDUE CA A 304
005	AC5	SOFTWARE	ASP A:124 , GLU A:199 , GLU A:201	BINDING SITE FOR RESIDUE CA A 305
006	AC6	SOFTWARE	PX4 A:321 , PX4 A:322 , PX4 A:328 , PX4 A:353 , PX4 A:354 , PX4 A:360 , PX4 A:361 , PX4 A:367 , PX4 A:423	BINDING SITE FOR RESIDUE PX4 A 306
007	AC7	SOFTWARE	ALA A:167 , HIS A:168 , GLY A:169 , ASP A:170 , PHE A:171 , PX4 A:314 , PX4 A:315 , PX4 A:349 , PX4 A:361 , PX4 A:362	BINDING SITE FOR RESIDUE PX4 A 307
008	AC8	SOFTWARE	PX4 A:310 , PX4 A:311 , PX4 A:315 , PX4 A:364 , PX4 A:410 , PX4 A:426	BINDING SITE FOR RESIDUE PX4 A 308
009	AC9	SOFTWARE	PX4 A:316 , PX4 A:319 , PX4 A:320 , PX4 A:377 , PX4 A:378	BINDING SITE FOR RESIDUE PX4 A 309
010	BC1	SOFTWARE	PX4 A:308 , PX4 A:363 , PX4 A:364 , PX4 A:365 , PX4 A:400 , PX4 A:426	BINDING SITE FOR RESIDUE PX4 A 310
011	BC2	SOFTWARE	PX4 A:308 , PX4 A:320	BINDING SITE FOR RESIDUE PX4 A 311
012	BC3	SOFTWARE	PX4 A:359 , PX4 A:360 , PX4 A:366	BINDING SITE FOR RESIDUE PX4 A 312
013	BC4	SOFTWARE	PX4 A:327 , PX4 A:328 , PX4 A:329 , PX4 A:359 , PX4 A:419	BINDING SITE FOR RESIDUE PX4 A 313
014	BC5	SOFTWARE	ASP A:170 , ILE A:191 , PX4 A:307 , PX4 A:349 , PX4 A:355 , PX4 A:364 , PX4 A:416	BINDING SITE FOR RESIDUE PX4 A 314
015	BC6	SOFTWARE	PX4 A:307 , PX4 A:308 , PX4 A:316 , PX4 A:323 , PX4 A:361 , PX4 A:364	BINDING SITE FOR RESIDUE PX4 A 315
016	BC7	SOFTWARE	PX4 A:309 , PX4 A:315 , PX4 A:320 , PX4 A:410 , PX4 A:418 , PX4 A:429	BINDING SITE FOR RESIDUE PX4 A 316
017	BC8	SOFTWARE	PX4 A:324 , PX4 A:325 , PX4 A:341 , PX4 A:342 , PX4 A:363	BINDING SITE FOR RESIDUE PX4 A 317
018	BC9	SOFTWARE	PX4 A:327	BINDING SITE FOR RESIDUE PX4 A 318
019	CC1	SOFTWARE	PX4 A:309 , PX4 A:333	BINDING SITE FOR RESIDUE PX4 A 319
020	CC2	SOFTWARE	PX4 A:309 , PX4 A:311 , PX4 A:316 , PX4 A:376 , PX4 A:378	BINDING SITE FOR RESIDUE PX4 A 320
021	CC3	SOFTWARE	ARG A:165 , ALA A:167 , PX4 A:306 , PX4 A:328 , PX4 A:354 , PX4 A:360 , PX4 A:362 , PX4 A:421	BINDING SITE FOR RESIDUE PX4 A 321
022	CC4	SOFTWARE	PX4 A:306 , PX4 A:323 , PX4 A:329 , PX4 A:361 , PX4 A:421	BINDING SITE FOR RESIDUE PX4 A 322
023	CC5	SOFTWARE	PX4 A:315 , PX4 A:322 , PX4 A:329	BINDING SITE FOR RESIDUE PX4 A 323
024	CC6	SOFTWARE	PX4 A:317 , PX4 A:341 , PX4 A:342	BINDING SITE FOR RESIDUE PX4 A 324
025	CC7	SOFTWARE	PX4 A:317 , PX4 A:326 , PX4 A:334 , PX4 A:341 , PX4 A:394	BINDING SITE FOR RESIDUE PX4 A 325
026	CC8	SOFTWARE	PX4 A:325 , PX4 A:334 , PX4 A:342 , PX4 A:350 , PX4 A:351 , PX4 A:352 , PX4 A:363	BINDING SITE FOR RESIDUE PX4 A 326
027	CC9	SOFTWARE	PX4 A:313 , PX4 A:318 , PX4 A:359 , PX4 A:374	BINDING SITE FOR RESIDUE PX4 A 327
028	DC1	SOFTWARE	PX4 A:306 , PX4 A:313 , PX4 A:321 , PX4 A:329 , PX4 A:354 , PX4 A:360 , PX4 A:428	BINDING SITE FOR RESIDUE PX4 A 328
029	DC2	SOFTWARE	PX4 A:313 , PX4 A:322 , PX4 A:323 , PX4 A:328 , PX4 A:359	BINDING SITE FOR RESIDUE PX4 A 329
030	DC3	SOFTWARE	PX4 A:335 , PX4 A:336 , PX4 A:337 , PX4 A:338 , PX4 A:339 , PX4 A:343 , PX4 A:344 , PX4 A:347 , PX4 A:357	BINDING SITE FOR RESIDUE PX4 A 330
031	DC4	SOFTWARE	ASN A:153 , THR A:154 , PX4 A:332 , PX4 A:340 , PX4 A:347 , PX4 A:348 , PX4 A:355	BINDING SITE FOR RESIDUE PX4 A 331
032	DC5	SOFTWARE	PX4 A:331 , PX4 A:334 , PX4 A:339 , PX4 A:355 , PX4 A:356	BINDING SITE FOR RESIDUE PX4 A 332
033	DC6	SOFTWARE	PX4 A:319	BINDING SITE FOR RESIDUE PX4 A 333
034	DC7	SOFTWARE	MET A:156 , PX4 A:325 , PX4 A:326 , PX4 A:332 , PX4 A:349 , PX4 A:350 , PX4 A:356	BINDING SITE FOR RESIDUE PX4 A 334
035	DC8	SOFTWARE	PX4 A:330 , PX4 A:343 , PX4 A:344	BINDING SITE FOR RESIDUE PX4 A 335
036	DC9	SOFTWARE	PX4 A:330 , PX4 A:339 , PX4 A:344 , PX4 A:347	BINDING SITE FOR RESIDUE PX4 A 336
037	EC1	SOFTWARE	PX4 A:330 , PX4 A:338 , PX4 A:343 , PX4 A:345 , PX4 A:357	BINDING SITE FOR RESIDUE PX4 A 337
038	EC2	SOFTWARE	PX4 A:330 , PX4 A:337 , PX4 A:345 , PX4 A:347 , PX4 A:348 , PX4 A:355	BINDING SITE FOR RESIDUE PX4 A 338
039	EC3	SOFTWARE	PX4 A:330 , PX4 A:332 , PX4 A:336 , PX4 A:347 , PX4 A:355 , PX4 A:389	BINDING SITE FOR RESIDUE PX4 A 339
040	EC4	SOFTWARE	PX4 A:331 , PX4 A:341 , PX4 A:347 , PX4 A:407	BINDING SITE FOR RESIDUE PX4 A 340
041	EC5	SOFTWARE	PX4 A:317 , PX4 A:324 , PX4 A:325 , PX4 A:340 , PX4 A:407	BINDING SITE FOR RESIDUE PX4 A 341
042	EC6	SOFTWARE	PX4 A:317 , PX4 A:324 , PX4 A:326 , PX4 A:351 , PX4 A:352 , PX4 A:401	BINDING SITE FOR RESIDUE PX4 A 342
043	EC7	SOFTWARE	PX4 A:330 , PX4 A:335 , PX4 A:337 , PX4 A:344 , PX4 A:347	BINDING SITE FOR RESIDUE PX4 A 343
044	EC8	SOFTWARE	PX4 A:330 , PX4 A:335 , PX4 A:336 , PX4 A:343 , PX4 A:347	BINDING SITE FOR RESIDUE PX4 A 344
045	EC9	SOFTWARE	TYR A:121 , PRO A:123 , PX4 A:337 , PX4 A:338 , PX4 A:346 , PX4 A:348 , PX4 A:353 , PX4 A:354 , PX4 A:357	BINDING SITE FOR RESIDUE PX4 A 345
046	FC1	SOFTWARE	ARG A:165 , PX4 A:345 , PX4 A:353 , PX4 A:354 , PX4 A:355 , PX4 A:356 , PX4 A:360 , PX4 A:362	BINDING SITE FOR RESIDUE PX4 A 346
047	FC2	SOFTWARE	PX4 A:330 , PX4 A:331 , PX4 A:336 , PX4 A:338 , PX4 A:339 , PX4 A:340 , PX4 A:343 , PX4 A:344 , PX4 A:348	BINDING SITE FOR RESIDUE PX4 A 347
048	FC3	SOFTWARE	ASN A:119 , PX4 A:331 , PX4 A:338 , PX4 A:345 , PX4 A:347 , PX4 A:355 , PX4 A:407	BINDING SITE FOR RESIDUE PX4 A 348
049	FC4	SOFTWARE	ILE A:191 , PX4 A:307 , PX4 A:314 , PX4 A:334 , PX4 A:356	BINDING SITE FOR RESIDUE PX4 A 349
050	FC5	SOFTWARE	MET A:156 , GLY A:190 , PX4 A:326 , PX4 A:334 , PX4 A:363 , PX4 A:365 , PX4 A:409	BINDING SITE FOR RESIDUE PX4 A 350
051	FC6	SOFTWARE	PX4 A:326 , PX4 A:342 , PX4 A:352 , PX4 A:385 , PX4 A:394	BINDING SITE FOR RESIDUE PX4 A 351
052	FC7	SOFTWARE	PX4 A:326 , PX4 A:342 , PX4 A:351	BINDING SITE FOR RESIDUE PX4 A 352
053	FC8	SOFTWARE	PX4 A:306 , PX4 A:345 , PX4 A:346 , PX4 A:354 , PX4 A:357 , PX4 A:362 , PX4 A:413	BINDING SITE FOR RESIDUE PX4 A 353
054	FC9	SOFTWARE	ARG A:165 , PX4 A:306 , PX4 A:321 , PX4 A:328 , PX4 A:345 , PX4 A:346 , PX4 A:353 , PX4 A:362	BINDING SITE FOR RESIDUE PX4 A 354
055	GC1	SOFTWARE	ASN A:119 , PX4 A:314 , PX4 A:331 , PX4 A:332 , PX4 A:338 , PX4 A:339 , PX4 A:346 , PX4 A:348 , PX4 A:356 , PX4 A:362 , PX4 A:422	BINDING SITE FOR RESIDUE PX4 A 355
056	GC2	SOFTWARE	ARG A:117 , ASN A:119 , LEU A:160 , PX4 A:332 , PX4 A:334 , PX4 A:346 , PX4 A:349 , PX4 A:355 , PX4 A:361 , PX4 A:362	BINDING SITE FOR RESIDUE PX4 A 356
057	GC3	SOFTWARE	PX4 A:330 , PX4 A:337 , PX4 A:345 , PX4 A:353 , PX4 A:358	BINDING SITE FOR RESIDUE PX4 A 357
058	GC4	SOFTWARE	PX4 A:357	BINDING SITE FOR RESIDUE PX4 A 358
059	GC5	SOFTWARE	PX4 A:312 , PX4 A:313 , PX4 A:327 , PX4 A:329 , PX4 A:360 , PX4 A:366	BINDING SITE FOR RESIDUE PX4 A 359
060	GC6	SOFTWARE	PX4 A:306 , PX4 A:312 , PX4 A:321 , PX4 A:328 , PX4 A:346 , PX4 A:359 , PX4 A:366	BINDING SITE FOR RESIDUE PX4 A 360
061	GC7	SOFTWARE	PHE A:171 , PX4 A:306 , PX4 A:307 , PX4 A:315 , PX4 A:322 , PX4 A:356 , PX4 A:369 , PX4 A:425	BINDING SITE FOR RESIDUE PX4 A 361
062	GC8	SOFTWARE	ASN A:120 , PHE A:163 , ALA A:164 , ARG A:165 , HIS A:168 , PX4 A:307 , PX4 A:321 , PX4 A:346 , PX4 A:353 , PX4 A:354 , PX4 A:355 , PX4 A:356	BINDING SITE FOR RESIDUE PX4 A 362
063	GC9	SOFTWARE	PX4 A:310 , PX4 A:317 , PX4 A:326 , PX4 A:350	BINDING SITE FOR RESIDUE PX4 A 363
064	HC1	SOFTWARE	PHE A:171 , PX4 A:308 , PX4 A:310 , PX4 A:314 , PX4 A:315 , PX4 A:410 , PX4 A:416 , PX4 A:422 , PX4 A:426	BINDING SITE FOR RESIDUE PX4 A 364
065	HC2	SOFTWARE	PX4 A:310 , PX4 A:350 , PX4 A:416	BINDING SITE FOR RESIDUE PX4 A 365
066	HC3	SOFTWARE	PX4 A:312 , PX4 A:359 , PX4 A:360 , PX4 A:412	BINDING SITE FOR RESIDUE PX4 A 366
067	HC4	SOFTWARE	PX4 A:306 , PX4 A:368 , PX4 A:412 , PX4 A:419 , PX4 A:424 , PX4 A:428 , PX4 A:430	BINDING SITE FOR RESIDUE PX4 A 367
068	HC5	SOFTWARE	PX4 A:367 , PX4 A:369 , PX4 A:390 , PX4 A:418 , PX4 A:421 , PX4 A:424 , PX4 A:429	BINDING SITE FOR RESIDUE PX4 A 368
069	HC6	SOFTWARE	PX4 A:361 , PX4 A:368 , PX4 A:418 , PX4 A:423 , PX4 A:425 , PX4 A:429	BINDING SITE FOR RESIDUE PX4 A 369
070	HC7	SOFTWARE	PX4 A:403 , PX4 A:411	BINDING SITE FOR RESIDUE PX4 A 370
071	HC8	SOFTWARE	PX4 A:376 , PX4 A:377	BINDING SITE FOR RESIDUE PX4 A 371
072	HC9	SOFTWARE	PX4 A:373	BINDING SITE FOR RESIDUE PX4 A 372
073	IC1	SOFTWARE	PX4 A:372 , PX4 A:381 , PX4 A:397 , PX4 A:402	BINDING SITE FOR RESIDUE PX4 A 373
074	IC2	SOFTWARE	PX4 A:327 , PX4 A:382 , PX4 A:412 , PX4 A:420 , PX4 A:427	BINDING SITE FOR RESIDUE PX4 A 374
075	IC3	SOFTWARE	PX4 A:389	BINDING SITE FOR RESIDUE PX4 A 375
076	IC4	SOFTWARE	PX4 A:320 , PX4 A:371 , PX4 A:377 , PX4 A:418	BINDING SITE FOR RESIDUE PX4 A 376
077	IC5	SOFTWARE	PX4 A:309 , PX4 A:371 , PX4 A:376 , PX4 A:378 , PX4 A:418	BINDING SITE FOR RESIDUE PX4 A 377
078	IC6	SOFTWARE	PX4 A:309 , PX4 A:320 , PX4 A:377 , PX4 A:410 , PX4 A:418 , PX4 A:426	BINDING SITE FOR RESIDUE PX4 A 378
079	IC7	SOFTWARE	PX4 A:384 , PX4 A:385	BINDING SITE FOR RESIDUE PX4 A 379
080	IC8	SOFTWARE	PX4 A:381 , PX4 A:386	BINDING SITE FOR RESIDUE PX4 A 380
081	IC9	SOFTWARE	PX4 A:373 , PX4 A:380 , PX4 A:397 , PX4 A:402	BINDING SITE FOR RESIDUE PX4 A 381
082	JC1	SOFTWARE	PX4 A:374 , PX4 A:427 , PX4 A:428 , PX4 A:429	BINDING SITE FOR RESIDUE PX4 A 382
083	JC2	SOFTWARE	PX4 A:399	BINDING SITE FOR RESIDUE PX4 A 383
084	JC3	SOFTWARE	PX4 A:379 , PX4 A:385	BINDING SITE FOR RESIDUE PX4 A 384
085	JC4	SOFTWARE	PX4 A:351 , PX4 A:379 , PX4 A:384 , PX4 A:392 , PX4 A:393	BINDING SITE FOR RESIDUE PX4 A 385
086	JC5	SOFTWARE	PX4 A:380 , PX4 A:387 , PX4 A:411	BINDING SITE FOR RESIDUE PX4 A 386
087	JC6	SOFTWARE	PX4 A:386 , PX4 A:411	BINDING SITE FOR RESIDUE PX4 A 387
088	JC7	SOFTWARE	PX4 A:395 , PX4 A:396 , PX4 A:397 , PX4 A:405 , PX4 A:406	BINDING SITE FOR RESIDUE PX4 A 388
089	JC8	SOFTWARE	PX4 A:339 , PX4 A:375 , PX4 A:397 , PX4 A:398	BINDING SITE FOR RESIDUE PX4 A 389
090	JC9	SOFTWARE	PX4 A:368 , PX4 A:429	BINDING SITE FOR RESIDUE PX4 A 390
091	KC1	SOFTWARE	PX4 A:392 , PX4 A:393 , PX4 A:405 , PX4 A:408 , PX4 A:414 , PX4 A:415	BINDING SITE FOR RESIDUE PX4 A 391
092	KC2	SOFTWARE	PX4 A:385 , PX4 A:391 , PX4 A:393 , PX4 A:399	BINDING SITE FOR RESIDUE PX4 A 392
093	KC3	SOFTWARE	PX4 A:385 , PX4 A:391 , PX4 A:392 , PX4 A:394 , PX4 A:408	BINDING SITE FOR RESIDUE PX4 A 393
094	KC4	SOFTWARE	PX4 A:325 , PX4 A:351 , PX4 A:393 , PX4 A:401	BINDING SITE FOR RESIDUE PX4 A 394
095	KC5	SOFTWARE	PX4 A:388 , PX4 A:396 , PX4 A:405 , PX4 A:406	BINDING SITE FOR RESIDUE PX4 A 395
096	KC6	SOFTWARE	PX4 A:388 , PX4 A:395 , PX4 A:397 , PX4 A:398 , PX4 A:405 , PX4 A:407	BINDING SITE FOR RESIDUE PX4 A 396
097	KC7	SOFTWARE	PX4 A:373 , PX4 A:381 , PX4 A:388 , PX4 A:389 , PX4 A:396 , PX4 A:398	BINDING SITE FOR RESIDUE PX4 A 397
098	KC8	SOFTWARE	PX4 A:389 , PX4 A:396 , PX4 A:397 , PX4 A:407	BINDING SITE FOR RESIDUE PX4 A 398
099	KC9	SOFTWARE	PX4 A:383 , PX4 A:392 , PX4 A:407	BINDING SITE FOR RESIDUE PX4 A 399
100	LC1	SOFTWARE	PX4 A:310 , PX4 A:401 , PX4 A:408 , PX4 A:409	BINDING SITE FOR RESIDUE PX4 A 400
101	LC2	SOFTWARE	PX4 A:342 , PX4 A:394 , PX4 A:400	BINDING SITE FOR RESIDUE PX4 A 401
102	LC3	SOFTWARE	PX4 A:373 , PX4 A:381 , PX4 A:403 , PX4 A:404 , PX4 A:411	BINDING SITE FOR RESIDUE PX4 A 402
103	LC4	SOFTWARE	PX4 A:370 , PX4 A:402 , PX4 A:404 , PX4 A:411 , PX4 A:419	BINDING SITE FOR RESIDUE PX4 A 403
104	LC5	SOFTWARE	PX4 A:402 , PX4 A:403 , PX4 A:412 , PX4 A:413 , PX4 A:419 , PX4 A:430	BINDING SITE FOR RESIDUE PX4 A 404
105	LC6	SOFTWARE	PX4 A:388 , PX4 A:391 , PX4 A:395 , PX4 A:396 , PX4 A:406 , PX4 A:414 , PX4 A:415	BINDING SITE FOR RESIDUE PX4 A 405
106	LC7	SOFTWARE	PX4 A:388 , PX4 A:395 , PX4 A:405 , PX4 A:415 , PX4 A:422 , PX4 A:423	BINDING SITE FOR RESIDUE PX4 A 406
107	LC8	SOFTWARE	PX4 A:340 , PX4 A:341 , PX4 A:348 , PX4 A:396 , PX4 A:398 , PX4 A:399 , PX4 A:414 , PX4 A:415	BINDING SITE FOR RESIDUE PX4 A 407
108	LC9	SOFTWARE	PX4 A:391 , PX4 A:393 , PX4 A:400 , PX4 A:409 , PX4 A:415	BINDING SITE FOR RESIDUE PX4 A 408
109	MC1	SOFTWARE	PX4 A:350 , PX4 A:400 , PX4 A:408 , PX4 A:415 , PX4 A:422	BINDING SITE FOR RESIDUE PX4 A 409
110	MC2	SOFTWARE	PX4 A:308 , PX4 A:316 , PX4 A:364 , PX4 A:378 , PX4 A:418 , PX4 A:425 , PX4 A:426	BINDING SITE FOR RESIDUE PX4 A 410
111	MC3	SOFTWARE	PX4 A:370 , PX4 A:386 , PX4 A:387 , PX4 A:402 , PX4 A:403	BINDING SITE FOR RESIDUE PX4 A 411
112	MC4	SOFTWARE	PX4 A:366 , PX4 A:367 , PX4 A:374 , PX4 A:404 , PX4 A:419 , PX4 A:428 , PX4 A:429 , PX4 A:430	BINDING SITE FOR RESIDUE PX4 A 412
113	MC5	SOFTWARE	PX4 A:353 , PX4 A:404 , PX4 A:421 , PX4 A:423 , PX4 A:424 , PX4 A:430	BINDING SITE FOR RESIDUE PX4 A 413
114	MC6	SOFTWARE	PX4 A:391 , PX4 A:405 , PX4 A:407	BINDING SITE FOR RESIDUE PX4 A 414
115	MC7	SOFTWARE	PX4 A:391 , PX4 A:405 , PX4 A:406 , PX4 A:407 , PX4 A:408 , PX4 A:409 , PX4 A:422 , PX4 A:425	BINDING SITE FOR RESIDUE PX4 A 415
116	MC8	SOFTWARE	PX4 A:314 , PX4 A:364 , PX4 A:365 , PX4 A:422 , PX4 A:425 , PX4 A:426	BINDING SITE FOR RESIDUE PX4 A 416
117	MC9	SOFTWARE	PX4 A:426	BINDING SITE FOR RESIDUE PX4 A 417
118	NC1	SOFTWARE	PX4 A:316 , PX4 A:368 , PX4 A:369 , PX4 A:376 , PX4 A:377 , PX4 A:378 , PX4 A:410 , PX4 A:425	BINDING SITE FOR RESIDUE PX4 A 418
119	NC2	SOFTWARE	PX4 A:313 , PX4 A:367 , PX4 A:403 , PX4 A:404 , PX4 A:412 , PX4 A:427 , PX4 A:430	BINDING SITE FOR RESIDUE PX4 A 419
120	NC3	SOFTWARE	PX4 A:374 , PX4 A:427	BINDING SITE FOR RESIDUE PX4 A 420
121	NC4	SOFTWARE	PX4 A:321 , PX4 A:322 , PX4 A:368 , PX4 A:413 , PX4 A:423	BINDING SITE FOR RESIDUE PX4 A 421
122	NC5	SOFTWARE	PX4 A:355 , PX4 A:364 , PX4 A:406 , PX4 A:409 , PX4 A:415 , PX4 A:416 , PX4 A:423 , PX4 A:425	BINDING SITE FOR RESIDUE PX4 A 422
123	NC6	SOFTWARE	PX4 A:306 , PX4 A:369 , PX4 A:406 , PX4 A:413 , PX4 A:421 , PX4 A:422 , PX4 A:424	BINDING SITE FOR RESIDUE PX4 A 423
124	NC7	SOFTWARE	PX4 A:367 , PX4 A:368 , PX4 A:413 , PX4 A:423 , PX4 A:428 , PX4 A:429	BINDING SITE FOR RESIDUE PX4 A 424
125	NC8	SOFTWARE	PX4 A:361 , PX4 A:369 , PX4 A:410 , PX4 A:415 , PX4 A:416 , PX4 A:418 , PX4 A:422	BINDING SITE FOR RESIDUE PX4 A 425
126	NC9	SOFTWARE	PX4 A:308 , PX4 A:310 , PX4 A:364 , PX4 A:378 , PX4 A:410 , PX4 A:416 , PX4 A:417	BINDING SITE FOR RESIDUE PX4 A 426
127	OC1	SOFTWARE	PX4 A:374 , PX4 A:382 , PX4 A:419 , PX4 A:420	BINDING SITE FOR RESIDUE PX4 A 427
128	OC2	SOFTWARE	PX4 A:328 , PX4 A:367 , PX4 A:382 , PX4 A:412 , PX4 A:424 , PX4 A:429 , PX4 A:430	BINDING SITE FOR RESIDUE PX4 A 428
129	OC3	SOFTWARE	PX4 A:316 , PX4 A:368 , PX4 A:369 , PX4 A:382 , PX4 A:390 , PX4 A:412 , PX4 A:424 , PX4 A:428	BINDING SITE FOR RESIDUE PX4 A 429
130	OC4	SOFTWARE	PX4 A:367 , PX4 A:404 , PX4 A:412 , PX4 A:413 , PX4 A:419 , PX4 A:428	BINDING SITE FOR RESIDUE PX4 A 430

(no "SS Bond" information available for 2MLS)

(no "Cis Peptide Bond" information available for 2MLS)

(no "SAP(SNP)/Variant" information available for 2MLS)

NMR Structure (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP12_HUMAN	215-224	1	A:215-224

NMR Structure * (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP12_HUMAN	215-224	1	A:215-224

(no "Exon" information available for 2MLS)

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:164
 aligned with MMP12_HUMAN | P39900 from UniProtKB/Swiss-Prot  Length:470

    Alignment length:164
                                   109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259    
          MMP12_HUMAN   100 FREMPGGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 263
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee.............hhhhhhhhhhhhhh.........................hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------ZINC_PROTE--------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2mls A 100 FREMPGGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHAIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 263
                                   109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2MLS)

(no "CATH Domain" information available for 2MLS)

(no "Pfam Domain" information available for 2MLS)

NMR Structure(hide GO term definitions)

Chain A (MMP12_HUMAN | P39900)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0004175	endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004222	metalloendopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008237	metallopeptidase activity	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0030574	collagen catabolic process	The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells.
	GO:0022617	extracellular matrix disassembly	A process that results in the breakdown of the extracellular matrix.
	GO:0050679	positive regulation of epithelial cell proliferation	Any process that activates or increases the rate or extent of epithelial cell proliferation.
	GO:0060054	positive regulation of epithelial cell proliferation involved in wound healing	Any process that activates or increases the rate or extent of epithelial cell proliferation, contributing to the restoration of integrity to a damaged tissue following an injury.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0042493	response to drug	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
	GO:0014070	response to organic cyclic compound	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
	GO:0042060	wound healing	The series of events that restore integrity to a damaged tissue, following an injury.
	GO:0035313	wound healing, spreading of epidermal cells	The migration of an epidermal cell along or through a wound gap that contributes to the reestablishment of a continuous epidermis.
cellular component
	GO:0031012	extracellular matrix	A structure lying external to one or more cells, which provides structural support for cells or tissues.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005578	proteinaceous extracellular matrix	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

NMR Structure
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PX4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		ZN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]
		CC2	[ RasMol ]	+environment [ RasMol ]
		CC3	[ RasMol ]	+environment [ RasMol ]
		CC4	[ RasMol ]	+environment [ RasMol ]
		CC5	[ RasMol ]	+environment [ RasMol ]
		CC6	[ RasMol ]	+environment [ RasMol ]
		CC7	[ RasMol ]	+environment [ RasMol ]
		CC8	[ RasMol ]	+environment [ RasMol ]
		CC9	[ RasMol ]	+environment [ RasMol ]
		DC1	[ RasMol ]	+environment [ RasMol ]
		DC2	[ RasMol ]	+environment [ RasMol ]
		DC3	[ RasMol ]	+environment [ RasMol ]
		DC4	[ RasMol ]	+environment [ RasMol ]
		DC5	[ RasMol ]	+environment [ RasMol ]
		DC6	[ RasMol ]	+environment [ RasMol ]
		DC7	[ RasMol ]	+environment [ RasMol ]
		DC8	[ RasMol ]	+environment [ RasMol ]
		DC9	[ RasMol ]	+environment [ RasMol ]
		EC1	[ RasMol ]	+environment [ RasMol ]
		EC2	[ RasMol ]	+environment [ RasMol ]
		EC3	[ RasMol ]	+environment [ RasMol ]
		EC4	[ RasMol ]	+environment [ RasMol ]
		EC5	[ RasMol ]	+environment [ RasMol ]
		EC6	[ RasMol ]	+environment [ RasMol ]
		EC7	[ RasMol ]	+environment [ RasMol ]
		EC8	[ RasMol ]	+environment [ RasMol ]
		EC9	[ RasMol ]	+environment [ RasMol ]
		FC1	[ RasMol ]	+environment [ RasMol ]
		FC2	[ RasMol ]	+environment [ RasMol ]
		FC3	[ RasMol ]	+environment [ RasMol ]
		FC4	[ RasMol ]	+environment [ RasMol ]
		FC5	[ RasMol ]	+environment [ RasMol ]
		FC6	[ RasMol ]	+environment [ RasMol ]
		FC7	[ RasMol ]	+environment [ RasMol ]
		FC8	[ RasMol ]	+environment [ RasMol ]
		FC9	[ RasMol ]	+environment [ RasMol ]
		GC1	[ RasMol ]	+environment [ RasMol ]
		GC2	[ RasMol ]	+environment [ RasMol ]
		GC3	[ RasMol ]	+environment [ RasMol ]
		GC4	[ RasMol ]	+environment [ RasMol ]
		GC5	[ RasMol ]	+environment [ RasMol ]
		GC6	[ RasMol ]	+environment [ RasMol ]
		GC7	[ RasMol ]	+environment [ RasMol ]
		GC8	[ RasMol ]	+environment [ RasMol ]
		GC9	[ RasMol ]	+environment [ RasMol ]
		HC1	[ RasMol ]	+environment [ RasMol ]
		HC2	[ RasMol ]	+environment [ RasMol ]
		HC3	[ RasMol ]	+environment [ RasMol ]
		HC4	[ RasMol ]	+environment [ RasMol ]
		HC5	[ RasMol ]	+environment [ RasMol ]
		HC6	[ RasMol ]	+environment [ RasMol ]
		HC7	[ RasMol ]	+environment [ RasMol ]
		HC8	[ RasMol ]	+environment [ RasMol ]
		HC9	[ RasMol ]	+environment [ RasMol ]
		IC1	[ RasMol ]	+environment [ RasMol ]
		IC2	[ RasMol ]	+environment [ RasMol ]
		IC3	[ RasMol ]	+environment [ RasMol ]
		IC4	[ RasMol ]	+environment [ RasMol ]
		IC5	[ RasMol ]	+environment [ RasMol ]
		IC6	[ RasMol ]	+environment [ RasMol ]
		IC7	[ RasMol ]	+environment [ RasMol ]
		IC8	[ RasMol ]	+environment [ RasMol ]
		IC9	[ RasMol ]	+environment [ RasMol ]
		JC1	[ RasMol ]	+environment [ RasMol ]
		JC2	[ RasMol ]	+environment [ RasMol ]
		JC3	[ RasMol ]	+environment [ RasMol ]
		JC4	[ RasMol ]	+environment [ RasMol ]
		JC5	[ RasMol ]	+environment [ RasMol ]
		JC6	[ RasMol ]	+environment [ RasMol ]
		JC7	[ RasMol ]	+environment [ RasMol ]
		JC8	[ RasMol ]	+environment [ RasMol ]
		JC9	[ RasMol ]	+environment [ RasMol ]
		KC1	[ RasMol ]	+environment [ RasMol ]
		KC2	[ RasMol ]	+environment [ RasMol ]
		KC3	[ RasMol ]	+environment [ RasMol ]
		KC4	[ RasMol ]	+environment [ RasMol ]
		KC5	[ RasMol ]	+environment [ RasMol ]
		KC6	[ RasMol ]	+environment [ RasMol ]
		KC7	[ RasMol ]	+environment [ RasMol ]
		KC8	[ RasMol ]	+environment [ RasMol ]
		KC9	[ RasMol ]	+environment [ RasMol ]
		LC1	[ RasMol ]	+environment [ RasMol ]
		LC2	[ RasMol ]	+environment [ RasMol ]
		LC3	[ RasMol ]	+environment [ RasMol ]
		LC4	[ RasMol ]	+environment [ RasMol ]
		LC5	[ RasMol ]	+environment [ RasMol ]
		LC6	[ RasMol ]	+environment [ RasMol ]
		LC7	[ RasMol ]	+environment [ RasMol ]
		LC8	[ RasMol ]	+environment [ RasMol ]
		LC9	[ RasMol ]	+environment [ RasMol ]
		MC1	[ RasMol ]	+environment [ RasMol ]
		MC2	[ RasMol ]	+environment [ RasMol ]
		MC3	[ RasMol ]	+environment [ RasMol ]
		MC4	[ RasMol ]	+environment [ RasMol ]
		MC5	[ RasMol ]	+environment [ RasMol ]
		MC6	[ RasMol ]	+environment [ RasMol ]
		MC7	[ RasMol ]	+environment [ RasMol ]
		MC8	[ RasMol ]	+environment [ RasMol ]
		MC9	[ RasMol ]	+environment [ RasMol ]
		NC1	[ RasMol ]	+environment [ RasMol ]
		NC2	[ RasMol ]	+environment [ RasMol ]
		NC3	[ RasMol ]	+environment [ RasMol ]
		NC4	[ RasMol ]	+environment [ RasMol ]
		NC5	[ RasMol ]	+environment [ RasMol ]
		NC6	[ RasMol ]	+environment [ RasMol ]
		NC7	[ RasMol ]	+environment [ RasMol ]
		NC8	[ RasMol ]	+environment [ RasMol ]
		NC9	[ RasMol ]	+environment [ RasMol ]
		OC1	[ RasMol ]	+environment [ RasMol ]
		OC2	[ RasMol ]	+environment [ RasMol ]
		OC3	[ RasMol ]	+environment [ RasMol ]
		OC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2mls)

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ NMR Structure - model 1 PNG format \| NMR Structure - model 1, sites PNG format \| NMR Structure - all models PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2mls
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	MMP12_HUMAN \| P39900
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	3.4.24.65
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	MMP12_HUMAN \| P39900
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

7089
2mlr	MMP-12 BOUND WITH ITS ALPHA-FACE TOWARD DMPC BILAYER AT ITS PROXIMITY LEAFLET.
2poj	NMR SOLUTION STRUCTURE OF FREE STATE OF MMP-12

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 130)

Sites (130, 130)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (21, 21)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File