2WO8 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   MMP12 COMPLEX WITH A BETA HYDROXY CARBOXYLIC ACID

Authors :   I. P. Holmes, S. Gaines, S. P. Watson, O. Lorthioir, A. Walker, S. J. Baddeley, S. Herbert, D. Egan, M. A. Convery, O. M. P. Singh, J. W. Gross, J. M. Strelow, R. H. Smith, A. J. Amour, D. Brown, S. L. Martin

Date :   22 Jul 09 (Deposition) - 08 Sep 09 (Release) - 22 Sep 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Hydrolase, Polymorphism, Glycoprotein, Metal-Binding, Matrix Metalloprotease Mmp-12 Complex Structure, Metalloprotease, Extracellular Matrix, Zymogen, Protease, Secreted (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. P. Holmes, S. Gaines, S. P. Watson, O. Lorthioir, A. Walker, S. J. Baddeley, S. Herbert, D. Egan, M. A. Convery, O. M. P. Singh, J. W. Gross, J. M. Strelow, R. H. Smith, A. J. Amour, D. Brown, S. L. Martin
The Identification Of Beta-Hydroxy Carboxylic Acids As Selective Mmp-12 Inhibitors.
Bioorg. Med. Chem. Lett. V. 19 5760 2009
PubMed-ID: 19703773 | Reference-DOI: 10.1016/J.BMCL.2009.07.155

Molecule 1 - MACROPHAGE METALLOELASTASE
	Cell	:	MACROPHAGE
	Chains	:	A, B, C, D
	EC Number	:	3.4.24.65
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET11A
	Expression System Strain	:	BLR(DE3)
	Expression System Taxid	:	562
	Fragment	:	CATALYTIC DOMAIN, RESIDUES 106-268
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	MATRIX METALLOPROTEINASE-12, MMP12, MACROPHAGE METALLOELASTASE, MACROPHAGE ELASTASE, ME

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 25)

No.	Name	Count	Type	Full Name
1	023	2	Ligand/Ion	N^2^-[(2R)-2-{(1S)-1-[FORMYL(HYDROXY)AMINO]ETHYL}-5-PHENYLPENTANOYL]-N,3-DIMETHYL-L-VALINAMIDE
2	077	2	Ligand/Ion	(3S)-5-BIPHENYL-4-YL-3-HYDROXYPENTANOIC ACID
3	CA	6	Ligand/Ion	CALCIUM ION
4	GOL	2	Ligand/Ion	GLYCEROL
5	SO4	5	Ligand/Ion	SULFATE ION
6	ZN	8	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	023	-1	Ligand/Ion	N^2^-[(2R)-2-{(1S)-1-[FORMYL(HYDROXY)AMINO]ETHYL}-5-PHENYLPENTANOYL]-N,3-DIMETHYL-L-VALINAMIDE
2	077	1	Ligand/Ion	(3S)-5-BIPHENYL-4-YL-3-HYDROXYPENTANOIC ACID
3	CA	-1	Ligand/Ion	CALCIUM ION
4	GOL	-1	Ligand/Ion	GLYCEROL
5	SO4	2	Ligand/Ion	SULFATE ION
6	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	023	1	Ligand/Ion	N^2^-[(2R)-2-{(1S)-1-[FORMYL(HYDROXY)AMINO]ETHYL}-5-PHENYLPENTANOYL]-N,3-DIMETHYL-L-VALINAMIDE
2	077	-1	Ligand/Ion	(3S)-5-BIPHENYL-4-YL-3-HYDROXYPENTANOIC ACID
3	CA	-1	Ligand/Ion	CALCIUM ION
4	GOL	-1	Ligand/Ion	GLYCEROL
5	SO4	1	Ligand/Ion	SULFATE ION
6	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	023	-1	Ligand/Ion	N^2^-[(2R)-2-{(1S)-1-[FORMYL(HYDROXY)AMINO]ETHYL}-5-PHENYLPENTANOYL]-N,3-DIMETHYL-L-VALINAMIDE
2	077	1	Ligand/Ion	(3S)-5-BIPHENYL-4-YL-3-HYDROXYPENTANOIC ACID
3	CA	-1	Ligand/Ion	CALCIUM ION
4	GOL	-1	Ligand/Ion	GLYCEROL
5	SO4	1	Ligand/Ion	SULFATE ION
6	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (3, 4)

No.	Name	Count	Type	Full Name
1	023	1	Ligand/Ion	N^2^-[(2R)-2-{(1S)-1-[FORMYL(HYDROXY)AMINO]ETHYL}-5-PHENYLPENTANOYL]-N,3-DIMETHYL-L-VALINAMIDE
2	077	-1	Ligand/Ion	(3S)-5-BIPHENYL-4-YL-3-HYDROXYPENTANOIC ACID
3	CA	-1	Ligand/Ion	CALCIUM ION
4	GOL	2	Ligand/Ion	GLYCEROL
5	SO4	1	Ligand/Ion	SULFATE ION
6	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLN A:259 , SER A:260 , GLY B:179 , ILE B:180 , LEU B:181 , ALA B:182 , LEU B:214 , THR B:215 , HIS B:218 , GLU B:219 , HIS B:222 , HIS B:228 , VAL B:235 , PRO B:238 , THR B:239 , TYR B:240 , LYS B:241 , ZN B:1269 , HOH B:2167 , SER D:207 , GOL D:1272	BINDING SITE FOR RESIDUE 023 B1268
02	AC2	SOFTWARE	GLN C:259 , SER C:260 , GLY D:179 , ILE D:180 , LEU D:181 , ALA D:182 , THR D:215 , HIS D:218 , GLU D:219 , HIS D:222 , HIS D:228 , PRO D:238 , THR D:239 , TYR D:240 , LYS D:241 , ZN D:1267 , GOL D:1271 , HOH D:2105 , HOH D:2106	BINDING SITE FOR RESIDUE 023 D1266
03	AC3	SOFTWARE	HIS A:218 , HIS A:222 , HIS A:228 , 077 A:1271	BINDING SITE FOR RESIDUE ZN A1268
04	AC4	SOFTWARE	HIS A:168 , ASP A:170 , HIS A:183 , HIS A:196	BINDING SITE FOR RESIDUE ZN A1269
05	AC5	SOFTWARE	ASP A:175 , GLY A:176 , GLY A:178 , ILE A:180 , ASP A:198 , GLU A:201	BINDING SITE FOR RESIDUE CA A1270
06	AC6	SOFTWARE	HIS B:218 , HIS B:222 , HIS B:228 , 023 B:1268	BINDING SITE FOR RESIDUE ZN B1269
07	AC7	SOFTWARE	HIS B:168 , ASP B:170 , HIS B:183 , HIS B:196	BINDING SITE FOR RESIDUE ZN B1270
08	AC8	SOFTWARE	ASP B:175 , GLY B:176 , GLY B:178 , ILE B:180 , ASP B:198 , GLU B:201	BINDING SITE FOR RESIDUE CA B1271
09	AC9	SOFTWARE	ASP B:158 , GLY B:190 , GLY B:192 , ASP B:194 , HOH B:2060 , HOH B:2086	BINDING SITE FOR RESIDUE CA B1272
10	BC1	SOFTWARE	HIS C:218 , HIS C:222 , HIS C:228 , 077 C:1271	BINDING SITE FOR RESIDUE ZN C1268
11	BC2	SOFTWARE	HIS C:168 , ASP C:170 , HIS C:183 , HIS C:196	BINDING SITE FOR RESIDUE ZN C1269
12	BC3	SOFTWARE	ASP C:175 , GLY C:176 , GLY C:178 , ILE C:180 , ASP C:198 , GLU C:201	BINDING SITE FOR RESIDUE CA C1270
13	BC4	SOFTWARE	HIS D:218 , HIS D:222 , HIS D:228 , 023 D:1266	BINDING SITE FOR RESIDUE ZN D1267
14	BC5	SOFTWARE	HIS D:168 , ASP D:170 , HIS D:183 , HIS D:196	BINDING SITE FOR RESIDUE ZN D1268
15	BC6	SOFTWARE	ASP D:175 , GLY D:176 , GLY D:178 , ILE D:180 , ASP D:198 , GLU D:201	BINDING SITE FOR RESIDUE CA D1269
16	BC7	SOFTWARE	ASP D:124 , GLU D:199 , GLU D:201 , HOH D:2070 , HOH D:2153	BINDING SITE FOR RESIDUE CA D1270
17	BC8	SOFTWARE	ILE A:180 , LEU A:181 , ALA A:182 , HIS A:218 , GLU A:219 , HIS A:222 , HIS A:228 , ALA A:234 , VAL A:235 , PHE A:237 , THR A:239 , TYR A:240 , LYS A:241 , ZN A:1268 , HOH A:2129 , HOH A:2130	BINDING SITE FOR RESIDUE 077 A1271
18	BC9	SOFTWARE	LEU C:181 , ALA C:182 , HIS C:218 , GLU C:219 , HIS C:222 , HIS C:228 , ALA C:234 , VAL C:235 , PHE C:237 , THR C:239 , TYR C:240 , LYS C:241 , ZN C:1268 , HOH C:2076 , HOH C:2122	BINDING SITE FOR RESIDUE 077 C1271
19	CC1	SOFTWARE	SER B:207 , GLY B:209 , TYR B:240 , TYR B:242 , THR D:210 , 023 D:1266 , HOH D:2107 , HOH D:2108	BINDING SITE FOR RESIDUE GOL D1271
20	CC2	SOFTWARE	LEU B:181 , THR B:210 , 023 B:1268 , SER D:207 , GLY D:208 , GLY D:209 , TYR D:240 , TYR D:242 , HOH D:2108 , HOH D:2109	BINDING SITE FOR RESIDUE GOL D1272
21	CC3	SOFTWARE	ARG A:110 , HOH A:2131 , HOH A:2132 , HOH A:2133 , ALA B:167 , HIS B:168 , GLY B:169 , ASP B:170 , PHE B:171 , ALA B:173	BINDING SITE FOR RESIDUE SO4 A1272
22	CC4	SOFTWARE	ARG C:110 , ALA D:167 , HIS D:168 , GLY D:169 , ASP D:170 , PHE D:171 , HIS D:172 , ALA D:173 , HOH D:2050 , HOH D:2110 , HOH D:2111 , HOH D:2112	BINDING SITE FOR RESIDUE SO4 D1273
23	CC5	SOFTWARE	THR C:204 , THR C:205 , HIS C:206 , SER C:207 , GLY C:208 , HOH C:2123	BINDING SITE FOR RESIDUE SO4 C1272
24	CC6	SOFTWARE	ALA A:167 , HIS A:168 , GLY A:169 , ASP A:170 , PHE A:171 , HIS A:172 , ALA A:173 , HOH A:2134 , HOH A:2135	BINDING SITE FOR RESIDUE SO4 A1273
25	CC7	SOFTWARE	ARG B:135 , LYS B:136 , GLN B:139	BINDING SITE FOR RESIDUE SO4 B1273

(no "SS Bond" information available for 2WO8)

(no "Cis Peptide Bond" information available for 2WO8)

(no "SAP(SNP)/Variant" information available for 2WO8)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP12_HUMAN	215-224	4	A:215-224 B:215-224 C:215-224 D:215-224

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP12_HUMAN	215-224	1	A:215-224 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP12_HUMAN	215-224	1	- B:215-224 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP12_HUMAN	215-224	1	- - C:215-224 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP12_HUMAN	215-224	1	- - - D:215-224

(no "Exon" information available for 2WO8)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:164
 aligned with MMP12_HUMAN | P39900 from UniProtKB/Swiss-Prot  Length:470

    Alignment length:164
                                   114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264    
          MMP12_HUMAN   105 GGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDPKEN 268
               SCOP domains d2wo8a_ A: Macrophage elastase (MMP-12)                                                                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee............hhhhhhhhhh..............................hhhhhh............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------ZINC_PROTE-------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wo8 A 105 MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDPKEN 268
                                   114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264

Chain B from PDB  Type:PROTEIN  Length:163
 aligned with MMP12_HUMAN | P39900 from UniProtKB/Swiss-Prot  Length:470

    Alignment length:163
                                   114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264   
          MMP12_HUMAN   105 GGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDPKE 267
               SCOP domains d2wo8b_ B: Macrophage elastase (MMP-12)                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee............hhhhhhhhhh.......................hhhhh..hhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------ZINC_PROTE------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wo8 B 105 MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDPKE 267
                                   114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264

Chain C from PDB  Type:PROTEIN  Length:163
 aligned with MMP12_HUMAN | P39900 from UniProtKB/Swiss-Prot  Length:470

    Alignment length:163
                                   114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264   
          MMP12_HUMAN   105 GGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDPKE 267
               SCOP domains d2wo8c_ C: Macrophage elastase (MMP-12)                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee............hhhhhhhhhh..............................hhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------ZINC_PROTE------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wo8 C 105 MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDPKE 267
                                   114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264

Chain D from PDB  Type:PROTEIN  Length:160
 aligned with MMP12_HUMAN | P39900 from UniProtKB/Swiss-Prot  Length:470

    Alignment length:160
                                   115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265
          MMP12_HUMAN   106 GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDP 265
               SCOP domains d2wo8d_ D: Macrophage elastase (MMP-12)                                                                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --Peptidase_M10-2wo8D01 D:108-263                                                                                                                             -- Pfam domains (1)
           Pfam domains (2) --Peptidase_M10-2wo8D02 D:108-263                                                                                                                             -- Pfam domains (2)
           Pfam domains (3) --Peptidase_M10-2wo8D03 D:108-263                                                                                                                             -- Pfam domains (3)
           Pfam domains (4) --Peptidase_M10-2wo8D04 D:108-263                                                                                                                             -- Pfam domains (4)
         Sec.struct. author .......eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee............hhhhhhhhhh.......................hhhhh..hhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------ZINC_PROTE----------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wo8 D 106 GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDP 265
                                   115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Zincin-like (701)

Superfamily: Metalloproteases (zincins), catalytic domain (647)

Family: Matrix metalloproteases, catalytic domain (199)

Protein domain: Macrophage elastase (MMP-12) (34)

Human (Homo sapiens) [TaxId: 9606] (34)

1a	d2wo8a_	A:
1b	d2wo8b_	B:
1c	d2wo8c_	C:
1d	d2wo8d_	D:

(no "CATH Domain" information available for 2WO8)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Peptidase_MA (251)

Family: Peptidase_M10 (85)

Homo sapiens (Human) (82)

1a	Peptidase_M10-2wo8D01	D:108-263
1b	Peptidase_M10-2wo8D02	D:108-263
1c	Peptidase_M10-2wo8D03	D:108-263
1d	Peptidase_M10-2wo8D04	D:108-263

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (MMP12_HUMAN | P39900)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0004175	endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004222	metalloendopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008237	metallopeptidase activity	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0030574	collagen catabolic process	The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells.
	GO:0022617	extracellular matrix disassembly	A process that results in the breakdown of the extracellular matrix.
	GO:0050679	positive regulation of epithelial cell proliferation	Any process that activates or increases the rate or extent of epithelial cell proliferation.
	GO:0060054	positive regulation of epithelial cell proliferation involved in wound healing	Any process that activates or increases the rate or extent of epithelial cell proliferation, contributing to the restoration of integrity to a damaged tissue following an injury.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0042493	response to drug	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
	GO:0014070	response to organic cyclic compound	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
	GO:0042060	wound healing	The series of events that restore integrity to a damaged tissue, following an injury.
	GO:0035313	wound healing, spreading of epidermal cells	The migration of an epidermal cell along or through a wound gap that contributes to the reestablishment of a continuous epidermis.
cellular component
	GO:0031012	extracellular matrix	A structure lying external to one or more cells, which provides structural support for cells or tissues.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005578	proteinaceous extracellular matrix	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

Asymmetric Unit
	Complete Structure
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	Cis Peptide Bonds
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Access by PDB/NDB ID
	2wo8
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	3.4.24.65
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	MMP12_HUMAN \| P39900
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1jiz	CRYSTAL STRUCTURE ANALYSIS OF HUMAN MACROPHAGE ELASTASE MMP-12
1jk3	CRYSTAL STRUCTURE OF HUMAN MMP-12 ( MACROPHAGE ELASTASE) ATTRUE ATOMIC RESOLUTION
1os2	TERNARY ENZYME-PRODUCT-INHIBITOR COMPLEXES OF HUMAN MMP12
1os9	BINARY ENZYME-PRODUCT COMPLEXES OF HUMAN MMP12
1rmz	CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN MMP12COMPLEXED WITH THE INHIBITOR NNGH AT 1.3 A RESOLUTION
1ros	CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO 2 -(1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2- YL)ETHYL-4-(4-ETHOXY[1,1-BIPHENYL]-4- YL)-4-OXOBUTANOIC ACID
1utt	CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO 2 -(1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2- YL)ETHYL-4-(4-ETHOXY[1,1-BIPHENYL]-4- YL)-4-OXOBUTANOIC ACID
1utz	CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO ( 2R)-3-({[4-[(PYRIDIN-4-YL)PHENYL]-THIEN- 2-YL}CARBOXAMIDO)(PHENYL)PROPANOIC ACID
1y93	CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN MMP12COMPLEXED WITH ACETOHYDROXAMIC ACID AT ATOMIC RESOLUTION
1ycm	SOLUTION STRUCTURE OF MATRIX METALLOPROTEINASE 12 (MMP12)IN THE PRESENCE OF N-ISOBUTYL- N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID (NNGH)
1z3j	SOLUTION STRUCTURE OF MMP12 IN THE PRESENCE OF N-ISOBUTYL-N-4-METHOXYPHENYLSULFONYL] GLYCYL HYDROXAMIC ACID (NNGH)
2w0d	DOES A FAST NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY- AND X-RAY CRYSTALLOGRAPHY HYBRID APPROACH PROVIDE RELIABLE STRUCTURAL INFORMATION OF LIGAND-PROTEIN COMPLEXES? A CASE STUDY OF METALLOPROTEINASES.
2wo9	MMP12 COMPLEX WITH A BETA HYDROXY CARBOXYLIC ACID
2woa	MMP12 COMPLEX WITH A BETA HYDROXY CARBOXYLIC ACID

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 25)

Sites (25, 25)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (1, 4)

Gene Ontology (21, 21)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File