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(-) Description

Title :  MMP12 COMPLEX WITH A BETA HYDROXY CARBOXYLIC ACID
 
Authors :  I. P. Holmes, S. Gaines, S. P. Watson, O. Lorthioir, A. Walker, S. J. Baddeley, S. Herbert, D. Egan, M. A. Convery, O. M. P. Singh, J. W. Gross, J. M. Strelow, R. H. Smith, A. J. Amour, D. Brown, S. L. Martin
Date :  22 Jul 09  (Deposition) - 08 Sep 09  (Release) - 22 Sep 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Hydrolase, Polymorphism, Glycoprotein, Metal-Binding, Matrix Metalloprotease Mmp-12 Complex Structure, Metalloprotease, Extracellular Matrix, Zymogen, Protease, Secreted (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  I. P. Holmes, S. Gaines, S. P. Watson, O. Lorthioir, A. Walker, S. J. Baddeley, S. Herbert, D. Egan, M. A. Convery, O. M. P. Singh, J. W. Gross, J. M. Strelow, R. H. Smith, A. J. Amour, D. Brown, S. L. Martin
The Identification Of Beta-Hydroxy Carboxylic Acids As Selective Mmp-12 Inhibitors.
Bioorg. Med. Chem. Lett. V. 19 5760 2009
PubMed-ID: 19703773  |  Reference-DOI: 10.1016/J.BMCL.2009.07.155

(-) Compounds

Molecule 1 - MACROPHAGE METALLOELASTASE
    CellMACROPHAGE
    ChainsA, B, C, D
    EC Number3.4.24.65
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET11A
    Expression System StrainBLR(DE3)
    Expression System Taxid562
    FragmentCATALYTIC DOMAIN, RESIDUES 106-268
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMMP12, MATRIX METALLOPROTEINASE-12, MACROPHAGE ELASTASE, HME, MMP-12, ME

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A   
Biological Unit 2 (1x) B  
Biological Unit 3 (1x)  C 
Biological Unit 4 (1x)   D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 31)

Asymmetric Unit (6, 31)
No.NameCountTypeFull Name
10232Ligand/IonN^2^-[(2R)-2-{(1S)-1-[FORMYL(HYDROXY)AMINO]ETHYL}-5-PHENYLPENTANOYL]-N,3-DIMETHYL-L-VALINAMIDE
20682Ligand/Ion(3S)-5-(4'-ACETYLBIPHENYL-4-YL)-3-HYDROXYPENTANOIC ACID
3CA7Ligand/IonCALCIUM ION
4GOL3Ligand/IonGLYCEROL
5SO49Ligand/IonSULFATE ION
6ZN8Ligand/IonZINC ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1023-1Ligand/IonN^2^-[(2R)-2-{(1S)-1-[FORMYL(HYDROXY)AMINO]ETHYL}-5-PHENYLPENTANOYL]-N,3-DIMETHYL-L-VALINAMIDE
20681Ligand/Ion(3S)-5-(4'-ACETYLBIPHENYL-4-YL)-3-HYDROXYPENTANOIC ACID
3CA-1Ligand/IonCALCIUM ION
4GOL-1Ligand/IonGLYCEROL
5SO43Ligand/IonSULFATE ION
6ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
10231Ligand/IonN^2^-[(2R)-2-{(1S)-1-[FORMYL(HYDROXY)AMINO]ETHYL}-5-PHENYLPENTANOYL]-N,3-DIMETHYL-L-VALINAMIDE
2068-1Ligand/Ion(3S)-5-(4'-ACETYLBIPHENYL-4-YL)-3-HYDROXYPENTANOIC ACID
3CA-1Ligand/IonCALCIUM ION
4GOL-1Ligand/IonGLYCEROL
5SO43Ligand/IonSULFATE ION
6ZN-1Ligand/IonZINC ION
Biological Unit 3 (3, 3)
No.NameCountTypeFull Name
1023-1Ligand/IonN^2^-[(2R)-2-{(1S)-1-[FORMYL(HYDROXY)AMINO]ETHYL}-5-PHENYLPENTANOYL]-N,3-DIMETHYL-L-VALINAMIDE
20681Ligand/Ion(3S)-5-(4'-ACETYLBIPHENYL-4-YL)-3-HYDROXYPENTANOIC ACID
3CA-1Ligand/IonCALCIUM ION
4GOL1Ligand/IonGLYCEROL
5SO41Ligand/IonSULFATE ION
6ZN-1Ligand/IonZINC ION
Biological Unit 4 (3, 5)
No.NameCountTypeFull Name
10231Ligand/IonN^2^-[(2R)-2-{(1S)-1-[FORMYL(HYDROXY)AMINO]ETHYL}-5-PHENYLPENTANOYL]-N,3-DIMETHYL-L-VALINAMIDE
2068-1Ligand/Ion(3S)-5-(4'-ACETYLBIPHENYL-4-YL)-3-HYDROXYPENTANOIC ACID
3CA-1Ligand/IonCALCIUM ION
4GOL2Ligand/IonGLYCEROL
5SO42Ligand/IonSULFATE ION
6ZN-1Ligand/IonZINC ION

(-) Sites  (31, 31)

Asymmetric Unit (31, 31)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:259 , SER A:260 , GLY B:179 , ILE B:180 , LEU B:181 , ALA B:182 , LEU B:214 , THR B:215 , HIS B:218 , GLU B:219 , HIS B:222 , HIS B:228 , PRO B:238 , THR B:239 , TYR B:240 , LYS B:241 , ZN B:1268 , HOH B:2186 , GOL D:1272BINDING SITE FOR RESIDUE 023 B1267
02AC2SOFTWAREGLN C:259 , SER C:260 , GLY D:179 , ILE D:180 , LEU D:181 , ALA D:182 , LEU D:214 , THR D:215 , HIS D:218 , GLU D:219 , HIS D:222 , HIS D:228 , PRO D:238 , THR D:239 , TYR D:240 , LYS D:241 , ZN D:1267 , GOL D:1271 , HOH D:2142 , HOH D:2143BINDING SITE FOR RESIDUE 023 D1266
03AC3SOFTWAREHIS A:218 , HIS A:222 , HIS A:228 , 068 A:1271BINDING SITE FOR RESIDUE ZN A1268
04AC4SOFTWAREHIS A:168 , ASP A:170 , HIS A:183 , HIS A:196BINDING SITE FOR RESIDUE ZN A1269
05AC5SOFTWAREASP A:175 , GLY A:176 , GLY A:178 , ILE A:180 , ASP A:198 , GLU A:201BINDING SITE FOR RESIDUE CA A1270
06AC6SOFTWAREHIS B:218 , HIS B:222 , HIS B:228 , 023 B:1267BINDING SITE FOR RESIDUE ZN B1268
07AC7SOFTWAREHIS B:168 , ASP B:170 , HIS B:183 , HIS B:196BINDING SITE FOR RESIDUE ZN B1269
08AC8SOFTWAREASP B:175 , GLY B:176 , GLY B:178 , ILE B:180 , ASP B:198 , GLU B:201BINDING SITE FOR RESIDUE CA B1270
09AC9SOFTWAREASP B:158 , GLY B:190 , GLY B:192 , ASP B:194 , HOH B:2069 , HOH B:2103BINDING SITE FOR RESIDUE CA B1271
10BC1SOFTWAREASP B:124 , GLU B:199 , GLU B:201 , HOH B:2113 , HOH B:2118BINDING SITE FOR RESIDUE CA B1272
11BC2SOFTWAREHIS C:218 , HIS C:222 , HIS C:228 , 068 C:1272BINDING SITE FOR RESIDUE ZN C1269
12BC3SOFTWAREHIS C:168 , ASP C:170 , HIS C:183 , HIS C:196BINDING SITE FOR RESIDUE ZN C1270
13BC4SOFTWAREASP C:175 , GLY C:176 , GLY C:178 , ILE C:180 , ASP C:198 , GLU C:201BINDING SITE FOR RESIDUE CA C1271
14BC5SOFTWAREHIS D:218 , HIS D:222 , HIS D:228 , 023 D:1266BINDING SITE FOR RESIDUE ZN D1267
15BC6SOFTWAREHIS D:168 , ASP D:170 , HIS D:183 , HIS D:196BINDING SITE FOR RESIDUE ZN D1268
16BC7SOFTWAREASP D:175 , GLY D:176 , GLY D:178 , ILE D:180 , ASP D:198 , GLU D:201BINDING SITE FOR RESIDUE CA D1269
17BC8SOFTWAREASP D:124 , GLU D:199 , GLU D:201 , HOH D:2012BINDING SITE FOR RESIDUE CA D1270
18BC9SOFTWAREILE A:180 , LEU A:181 , ALA A:182 , LEU A:214 , HIS A:218 , GLU A:219 , HIS A:222 , HIS A:228 , LYS A:233 , VAL A:235 , PHE A:237 , PRO A:238 , THR A:239 , TYR A:240 , LYS A:241 , VAL A:243 , PHE A:248 , ZN A:1268 , HOH A:2145 , HOH A:2162 , HOH A:2163 , HOH A:2164BINDING SITE FOR RESIDUE 068 A1271
19CC1SOFTWARELEU C:181 , ALA C:182 , LEU C:214 , HIS C:218 , GLU C:219 , HIS C:222 , HIS C:228 , LYS C:233 , ALA C:234 , VAL C:235 , PHE C:237 , THR C:239 , TYR C:240 , VAL C:243 , PHE C:248 , ZN C:1269 , HOH C:2093 , HOH C:2153 , HOH C:2154 , HOH C:2155BINDING SITE FOR RESIDUE 068 C1272
20CC2SOFTWARESER B:207 , GLY B:209 , TYR B:240 , TYR B:242 , LEU D:181 , THR D:210 , 023 D:1266 , HOH D:2144 , HOH D:2146BINDING SITE FOR RESIDUE GOL D1271
21CC3SOFTWARELEU B:181 , THR B:210 , 023 B:1267 , SER D:207 , GLY D:208 , GLY D:209 , TYR D:240 , TYR D:242 , HOH D:2145 , HOH D:2146BINDING SITE FOR RESIDUE GOL D1272
22CC4SOFTWAREARG B:249 , HOH B:2155 , ALA C:252 , HOH C:2156BINDING SITE FOR RESIDUE GOL C1273
23CC5SOFTWAREARG A:110 , ALA B:167 , HIS B:168 , GLY B:169 , ASP B:170 , PHE B:171 , HIS B:172 , ALA B:173 , HOH B:2187 , HOH B:2188 , HOH B:2189 , HOH B:2190 , HOH B:2191BINDING SITE FOR RESIDUE SO4 B1273
24CC6SOFTWAREARG C:110 , HOH C:2157 , HOH C:2158 , HOH C:2159 , HOH C:2160 , ALA D:167 , HIS D:168 , GLY D:169 , ASP D:170 , PHE D:171 , HIS D:172 , ALA D:173BINDING SITE FOR RESIDUE SO4 C1274
25CC7SOFTWAREARG D:135 , LYS D:136 , GLN D:139BINDING SITE FOR RESIDUE SO4 D1273
26CC8SOFTWAREARG D:117 , THR D:154 , GLY D:155 , ARG D:256BINDING SITE FOR RESIDUE SO4 D1274
27CC9SOFTWAREALA A:167 , HIS A:168 , GLY A:169 , ASP A:170 , PHE A:171 , HOH A:2092 , HOH A:2094BINDING SITE FOR RESIDUE SO4 A1272
28DC1SOFTWAREARG A:135 , LYS A:136 , GLN A:139 , HOH A:2165BINDING SITE FOR RESIDUE SO4 A1273
29DC2SOFTWAREARG A:117 , THR A:154 , GLY A:155 , GLY D:190BINDING SITE FOR RESIDUE SO4 A1274
30DC3SOFTWAREARG B:135 , LYS B:136 , GLN B:139BINDING SITE FOR RESIDUE SO4 B1274
31DC4SOFTWAREARG B:117 , THR B:154 , GLY B:155BINDING SITE FOR RESIDUE SO4 B1275

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WO9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WO9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WO9)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZINC_PROTEASEPS00142 Neutral zinc metallopeptidases, zinc-binding region signature.MMP12_HUMAN215-224
 
 
 
  4A:215-224
B:215-224
C:215-224
D:215-224
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZINC_PROTEASEPS00142 Neutral zinc metallopeptidases, zinc-binding region signature.MMP12_HUMAN215-224
 
 
 
  1A:215-224
-
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZINC_PROTEASEPS00142 Neutral zinc metallopeptidases, zinc-binding region signature.MMP12_HUMAN215-224
 
 
 
  1-
B:215-224
-
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZINC_PROTEASEPS00142 Neutral zinc metallopeptidases, zinc-binding region signature.MMP12_HUMAN215-224
 
 
 
  1-
-
C:215-224
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZINC_PROTEASEPS00142 Neutral zinc metallopeptidases, zinc-binding region signature.MMP12_HUMAN215-224
 
 
 
  1-
-
-
D:215-224

(-) Exons   (0, 0)

(no "Exon" information available for 2WO9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:162
 aligned with MMP12_HUMAN | P39900 from UniProtKB/Swiss-Prot  Length:470

    Alignment length:162
                                   115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265  
          MMP12_HUMAN   106 GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDPKE 267
               SCOP domains d2wo9a_ A: Macrophage elastase (MMP-12)                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee............hhhhhhhhhh..............................hhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------ZINC_PROTE------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wo9 A 106 GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDPKE 267
                                   115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265  

Chain B from PDB  Type:PROTEIN  Length:162
 aligned with MMP12_HUMAN | P39900 from UniProtKB/Swiss-Prot  Length:470

    Alignment length:162
                                   114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264  
          MMP12_HUMAN   105 GGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDPK 266
               SCOP domains d2wo9b_ B: Macrophage elastase (MMP-12)                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee............hhhhhhhhhh.......................hhhhh..hhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------ZINC_PROTE------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wo9 B 105 MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDPK 266
                                   114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264  

Chain C from PDB  Type:PROTEIN  Length:164
 aligned with MMP12_HUMAN | P39900 from UniProtKB/Swiss-Prot  Length:470

    Alignment length:164
                                   114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264    
          MMP12_HUMAN   105 GGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDPKEN 268
               SCOP domains d2wo9c_ C: Macrophage elastase (MMP-12)                                                                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee............hhhhhhhhhh..............................hhhhhh............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------ZINC_PROTE-------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wo9 C 105 MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDPKEN 268
                                   114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264    

Chain D from PDB  Type:PROTEIN  Length:160
 aligned with MMP12_HUMAN | P39900 from UniProtKB/Swiss-Prot  Length:470

    Alignment length:160
                                   115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265
          MMP12_HUMAN   106 GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDP 265
               SCOP domains d2wo9d_ D: Macrophage elastase (MMP-12)                                                                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --Peptidase_M10-2wo9D01 D:108-263                                                                                                                             -- Pfam domains (1)
           Pfam domains (2) --Peptidase_M10-2wo9D02 D:108-263                                                                                                                             -- Pfam domains (2)
           Pfam domains (3) --Peptidase_M10-2wo9D03 D:108-263                                                                                                                             -- Pfam domains (3)
           Pfam domains (4) --Peptidase_M10-2wo9D04 D:108-263                                                                                                                             -- Pfam domains (4)
         Sec.struct. author .......eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee............hhhhhhhhhh.......................hhhhh..hhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------ZINC_PROTE----------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wo9 D 106 GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDP 265
                                   115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WO9)

(-) Pfam Domains  (1, 4)

Asymmetric Unit

(-) Gene Ontology  (21, 21)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (MMP12_HUMAN | P39900)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0004175    endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004222    metalloendopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008237    metallopeptidase activity    Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0030574    collagen catabolic process    The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells.
    GO:0022617    extracellular matrix disassembly    A process that results in the breakdown of the extracellular matrix.
    GO:0050679    positive regulation of epithelial cell proliferation    Any process that activates or increases the rate or extent of epithelial cell proliferation.
    GO:0060054    positive regulation of epithelial cell proliferation involved in wound healing    Any process that activates or increases the rate or extent of epithelial cell proliferation, contributing to the restoration of integrity to a damaged tissue following an injury.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0014070    response to organic cyclic compound    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
    GO:0042060    wound healing    The series of events that restore integrity to a damaged tissue, following an injury.
    GO:0035313    wound healing, spreading of epidermal cells    The migration of an epidermal cell along or through a wound gap that contributes to the reestablishment of a continuous epidermis.
cellular component
    GO:0031012    extracellular matrix    A structure lying external to one or more cells, which provides structural support for cells or tissues.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005578    proteinaceous extracellular matrix    A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MMP12_HUMAN | P399001jiz 1jk3 1os2 1os9 1rmz 1ros 1utt 1utz 1y93 1ycm 1z3j 2hu6 2jxy 2k2g 2k9c 2krj 2mlr 2mls 2n8r 2oxu 2oxw 2oxz 2poj 2w0d 2wo8 2woa 2z2d 3ba0 3ehx 3ehy 3f15 3f16 3f17 3f18 3f19 3f1a 3lik 3lil 3lir 3ljg 3lk8 3lka 3n2u 3n2v 3nx7 3rts 3rtt 3ts4 3tsk 3uvc 4efs 4gql 4gr0 4gr3 4gr8 4guy 4h30 4h49 4h76 4h84 4i03 4ijo 5cxa 5czm 5d2b 5d3c 5i0l 5i2z 5i3m 5i43 5i4o 5l79 5l7f 5lab

(-) Related Entries Specified in the PDB File

1jiz CRYSTAL STRUCTURE ANALYSIS OF HUMAN MACROPHAGE ELASTASE MMP-12
1jk3 CRYSTAL STRUCTURE OF HUMAN MMP-12 ( MACROPHAGE ELASTASE) ATTRUE ATOMIC RESOLUTION
1os2 TERNARY ENZYME-PRODUCT-INHIBITOR COMPLEXES OF HUMAN MMP12
1os9 BINARY ENZYME-PRODUCT COMPLEXES OF HUMAN MMP12
1rmz CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN MMP12COMPLEXED WITH THE INHIBITOR NNGH AT 1.3 A RESOLUTION
1ros CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO 2 -(1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2- YL)ETHYL-4-(4-ETHOXY[1,1-BIPHENYL]-4- YL)-4-OXOBUTANOIC ACID
1utt CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO 2 -(1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2- YL)ETHYL-4-(4-ETHOXY[1,1-BIPHENYL]-4- YL)-4-OXOBUTANOIC ACID
1utz CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO ( 2R)-3-({[4-[(PYRIDIN-4-YL)PHENYL]-THIEN- 2-YL}CARBOXAMIDO)(PHENYL)PROPANOIC ACID
1y93 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN MMP12COMPLEXED WITH ACETOHYDROXAMIC ACID AT ATOMIC RESOLUTION
1ycm SOLUTION STRUCTURE OF MATRIX METALLOPROTEINASE 12 (MMP12)IN THE PRESENCE OF N-ISOBUTYL- N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID (NNGH)
1z3j SOLUTION STRUCTURE OF MMP12 IN THE PRESENCE OF N-ISOBUTYL-N-4-METHOXYPHENYLSULFONYL] GLYCYL HYDROXAMIC ACID (NNGH)
2w0d DOES A FAST NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY- AND X-RAY CRYSTALLOGRAPHY HYBRID APPROACH PROVIDE RELIABLE STRUCTURAL INFORMATION OF LIGAND-PROTEIN COMPLEXES? A CASE STUDY OF METALLOPROTEINASES.
2wo8 MMP12 COMPLEX WITH A BETA HYDROXY CARBOXYLIC ACID
2woa MMP12 COMPLEX WITH A BETA HYDROXY CARBOXYLIC ACID